UHGV-0179582

Genome information

Genome length 41,104 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179582
vOTU ID	vOTU-060718
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578237
BioSample	SAMN07501152
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.19
Jumbo phage	No

Genome content
Genome length	41,104 bps
GC content	29.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.52%
Average CDS length	624.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179582_1	eggNOG-mapper	195103.CPF_1220	Diguanylate cyclase	NA
UHGV-0179582_1	COG	COG2199	GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants	NA
UHGV-0179582_2	PHROG	phrog_806	NA	unknown function
UHGV-0179582_2	UniRef90	UniRef90_Q8XLS5	NA	NA
UHGV-0179582_2	eggNOG-mapper	195103.CPF_1222	NA	NA
UHGV-0179582_2	Pfam	PF11611	NA	DUF4352
UHGV-0179582_3	KOfam	K05614	SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3	NA
UHGV-0179582_3	PHROG	phrog_16930	NA	unknown function
UHGV-0179582_3	UniRef90	UniRef90_A0A2Z3TWP5	Dicarboxylate/amino acid:cation symporter	NA
UHGV-0179582_3	eggNOG-mapper	195103.CPF_1223	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	NA
UHGV-0179582_3	Pfam	PF00375	Sodium:dicarboxylate symporter family	SDF
UHGV-0179582_3	COG	COG1301	Na+/H+-dicarboxylate symporter	NA
UHGV-0179582_3	Structural annotation	PF00375, MF_02063, NF008440, COG1301	NA	NA
UHGV-0179582_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0179582_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0179582_4	UniRef90	UniRef90_UPI0013E2B434	recombinase family protein	NA
UHGV-0179582_4	eggNOG-mapper	536232.CLM_2686	resolvase	NA
UHGV-0179582_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0179582_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0179582_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0179582_4	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0179582_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0179582_5	UniRef90	UniRef90_UPI000DA30141	helix-turn-helix domain-containing protein	NA
UHGV-0179582_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179582_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179582_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0179582_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179582_6	UniRef90	UniRef90_UPI000D9C6AAB	helix-turn-helix transcriptional regulator	NA
UHGV-0179582_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0179582_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179582_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179582_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0179582_7	UniRef90	UniRef90_UPI0011CBF610	helix-turn-helix domain-containing protein	NA
UHGV-0179582_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179582_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179582_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0179582_8	UniRef90	UniRef90_UPI001CC8F97E	Rha family transcriptional regulator	NA
UHGV-0179582_8	eggNOG-mapper	1280692.AUJL01000009_gene2976	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0179582_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0179582_8	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0179582_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0179582_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0179582_8	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0179582_10	PHROG	phrog_16446	NA	unknown function
UHGV-0179582_10	UniRef90	UniRef90_Q8SBM6	Gp28 protein	NA
UHGV-0179582_11	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0179582_11	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0179582_11	UniRef90	UniRef90_UPI000DA277FE	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0179582_11	eggNOG-mapper	1415774.U728_1706	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0179582_11	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0179582_11	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0179582_11	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0179582_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179582_11	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0179582_12	PHROG	phrog_35551	NA	unknown function
UHGV-0179582_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0179582_14	UniRef90	UniRef90_A0A336Q212	Siphovirus Gp157	NA
UHGV-0179582_14	eggNOG-mapper	546275.FUSPEROL_02051	Siphovirus Gp157	NA
UHGV-0179582_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0179582_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0179582_15	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179582_15	UniRef90	UniRef90_A0A336Q681	Essential recombination function protein	NA
UHGV-0179582_15	eggNOG-mapper	1415774.U728_771	ERF superfamily	NA
UHGV-0179582_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0179582_15	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0179582_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179582_17	UniRef90	UniRef90_UPI000D91C81F	GntR family transcriptional regulator	NA
UHGV-0179582_17	eggNOG-mapper	195103.CPF_0940	Transcriptional regulator	NA
UHGV-0179582_17	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0179582_17	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0179582_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0179582_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179582_20	UniRef90	UniRef90_A0A2Z3TRR9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0179582_20	eggNOG-mapper	195103.CPF_0942	Endodeoxyribonuclease RusA	NA
UHGV-0179582_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0179582_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0179582_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0179582_21	PHROG	phrog_14328	NA	unknown function
UHGV-0179582_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179582_25	UniRef90	UniRef90_UPI001ABB4C65	HNH endonuclease	NA
UHGV-0179582_25	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0179582_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179582_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179582_25	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0179582_26	PHROG	phrog_98	NA	unknown function
UHGV-0179582_26	UniRef90	UniRef90_UPI0013E3B418	YopX family protein	NA
UHGV-0179582_26	eggNOG-mapper	431943.CKL_3302	YopX protein	NA
UHGV-0179582_26	Pfam	PF09643	YopX protein	YopX
UHGV-0179582_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0179582_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0179582_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179582_28	UniRef90	UniRef90_A0A0N6WDZ3	Putative sigma factor	NA
UHGV-0179582_28	eggNOG-mapper	195103.CPF_0945	sigma factor activity	NA
UHGV-0179582_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179582_28	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0179582_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0179582_30	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0179582_30	UniRef90	UniRef90_UPI001CAF33C2	terminase small subunit	NA
UHGV-0179582_30	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0179582_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0179582_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0179582_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0179582_30	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0179582_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179582_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0179582_31	UniRef90	UniRef90_A0A381IS45	Terminase large subunit	NA
UHGV-0179582_31	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0179582_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0179582_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179582_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179582_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0179582_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0179582_32	UniRef90	UniRef90_A0A2X2YEJ1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179582_32	eggNOG-mapper	386415.NT01CX_2178	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0179582_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0179582_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0179582_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0179582_33	UniRef90	UniRef90_A0A381IRK9	Minor head protein	NA
UHGV-0179582_33	eggNOG-mapper	1443125.Z962_05660	Phage Mu protein F like protein	NA
UHGV-0179582_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0179582_33	COG	COG2369	NA	NA
UHGV-0179582_35	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0179582_36	PHROG	phrog_918	NA	unknown function
UHGV-0179582_36	UniRef90	UniRef90_UPI0005DA7338	NA	NA
UHGV-0179582_36	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-0179582_36	Pfam	PF19791	NA	DUF6275
UHGV-0179582_36	Structural annotation	PF19791	NA	NA
UHGV-0179582_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179582_37	UniRef90	UniRef90_A0A2X2YLX4	Scaffold protein	NA
UHGV-0179582_37	eggNOG-mapper	1443125.Z962_05640	Phage minor structural protein GP20	NA
UHGV-0179582_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179582_37	Structural annotation	PF06810	NA	NA
UHGV-0179582_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0179582_38	UniRef90	UniRef90_A0A381IQF1	NA	NA
UHGV-0179582_38	eggNOG-mapper	1294142.CINTURNW_1690	NA	NA
UHGV-0179582_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0179582_39	PHROG	phrog_2724	NA	unknown function
UHGV-0179582_39	UniRef90	UniRef90_A0A2X2YDF6	Rho_N domain-containing protein	NA
UHGV-0179582_39	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0179582_39	Structural annotation	PF07498	NA	NA
UHGV-0179582_40	PHROG	phrog_1236	head protein	head and packaging
UHGV-0179582_40	UniRef90	UniRef90_A0A098AQ51	Putative prophage protein	NA
UHGV-0179582_40	eggNOG-mapper	386415.NT01CX_2172	NA	NA
UHGV-0179582_40	Structural annotation	PF05135	NA	NA
UHGV-0179582_41	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0179582_41	UniRef90	UniRef90_A0A2X3AHT6	Phage head-tail adaptor	NA
UHGV-0179582_41	eggNOG-mapper	386415.NT01CX_2171	Phage head-tail joining protein	NA
UHGV-0179582_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179582_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179582_42	UniRef90	UniRef90_UPI000E0AF140	HK97 gp10 family phage protein	NA
UHGV-0179582_42	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0179582_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179582_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0179582_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0179582_43	PHROG	phrog_957	head protein	head and packaging
UHGV-0179582_43	eggNOG-mapper	929506.CbC4_1220	NA	NA
UHGV-0179582_43	Structural annotation	PF11367	NA	NA
UHGV-0179582_44	PHROG	phrog_885	major tail protein	tail
UHGV-0179582_44	UniRef90	UniRef90_A0A098ANP7	Putative prophage protein	NA
UHGV-0179582_44	eggNOG-mapper	929506.CbC4_1221	NA	NA
UHGV-0179582_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0179582_45	PHROG	phrog_1021	NA	unknown function
UHGV-0179582_45	eggNOG-mapper	1443125.Z962_05605	NA	NA
UHGV-0179582_46	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0179582_46	UniRef90	UniRef90_UPI001ABA3300	peptide methionine sulfoxide reductase	NA
UHGV-0179582_46	eggNOG-mapper	386415.NT01CX_2165	NA	NA
UHGV-0179582_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0179582_47	UniRef90	UniRef90_UPI00100C14B4	phage tail tape measure protein	NA
UHGV-0179582_47	eggNOG-mapper	386415.NT01CX_2164	tail tape measure protein	NA
UHGV-0179582_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179582_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179582_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0179582_48	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0179582_48	UniRef90	UniRef90_UPI0013E32B72	phage tail tape measure protein	NA
UHGV-0179582_48	eggNOG-mapper	929506.CbC4_1224	tail tape measure protein	NA
UHGV-0179582_48	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179582_48	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179582_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0179582_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179582_49	UniRef90	UniRef90_A0A2X2YDG8	Tail component family protein	NA
UHGV-0179582_49	eggNOG-mapper	1391647.AVSV01000039_gene1109	phage tail	NA
UHGV-0179582_49	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0179582_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179582_49	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0179582_50	PHROG	phrog_32017	NA	unknown function
UHGV-0179582_51	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0179582_51	PHROG	phrog_16267	NA	unknown function
UHGV-0179582_51	UniRef90	UniRef90_UPI0013E3E222	phage tail protein	NA
UHGV-0179582_51	eggNOG-mapper	1391647.AVSV01000039_gene1112	Phage minor structural protein	NA
UHGV-0179582_51	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0179582_51	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0179582_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179582_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179582_51	COG	COG4926	Phage-related protein	NA
UHGV-0179582_52	PHROG	phrog_6130	NA	unknown function
UHGV-0179582_52	eggNOG-mapper	272562.CA_C0064	NA	NA
UHGV-0179582_53	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0179582_53	UniRef90	UniRef90_UPI0013D1FEB5	BppU family phage baseplate upper protein	NA
UHGV-0179582_53	eggNOG-mapper	195103.CPF_1572	NA	NA
UHGV-0179582_53	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0179582_53	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0179582_54	PHROG	phrog_2310	NA	unknown function
UHGV-0179582_54	UniRef90	UniRef90_I2E8W6	Gp18	NA
UHGV-0179582_55	PHROG	phrog_1193	hemolysin	other
UHGV-0179582_55	UniRef90	UniRef90_UPI0018A8B3C2	hemolysin XhlA family protein	NA
UHGV-0179582_55	eggNOG-mapper	195103.CPF_1570	Haemolysin XhlA	NA
UHGV-0179582_55	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0179582_56	PHROG	phrog_9492	NA	unknown function
UHGV-0179582_56	UniRef90	UniRef90_I2E8W8	Gp20	NA
UHGV-0179582_56	eggNOG-mapper	195103.CPF_1569	NA	NA
UHGV-0179582_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0179582_57	PHROG	phrog_6219	endolysin	lysis
UHGV-0179582_57	UniRef90	UniRef90_Q0SPG7	Lysozyme	NA
UHGV-0179582_57	eggNOG-mapper	1187894.I2E8W9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0179582_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179582_57	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0179582_57	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0179582_58	PHROG	phrog_806	NA	unknown function
UHGV-0179582_58	UniRef90	UniRef90_A0A381IQ05	Telomeric repeat-binding factor 2	NA
UHGV-0179582_58	eggNOG-mapper	1391647.AVSV01000003_gene1524	NA	NA
UHGV-0179582_58	Pfam	PF11611	NA	DUF4352
UHGV-0179582_58	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0179582_59	UniRef90	UniRef90_K0JG40	Putative Na+/H+ dicarboxylate symporte	NA
UHGV-0179582_59	eggNOG-mapper	195103.CPF_1223	Belongs to the dicarboxylate amino acid cation symporter (DAACS) (TC 2.A.23) family	NA
UHGV-0179582_59	Pfam	PF00375	Sodium:dicarboxylate symporter family	SDF
UHGV-0179582_59	COG	COG1301	Na+/H+-dicarboxylate symporter	NA