UHGV-0179585

Genome information

Genome length 24,963 bps

CDS count 34

Completeness 69.32% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179585
vOTU ID	vOTU-016985
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_578222
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.96
Jumbo phage	No

Genome content
Genome length	24,963 bps
GC content	51.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.42%
Average CDS length	668.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179585_1	PHROG	phrog_785	holin	lysis
UHGV-0179585_1	UniRef90	UniRef90_A0A330YPJ8	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0179585_1	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0179585_1	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0179585_1	Structural annotation	PF16083	NA	NA
UHGV-0179585_2	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0179585_2	PHROG	phrog_12853	NA	unknown function
UHGV-0179585_2	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-0179585_2	eggNOG-mapper	393305.YE1815	secretion activating protein	NA
UHGV-0179585_2	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0179585_2	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0179585_2	COG	COG3926	Lysozyme family protein	NA
UHGV-0179585_2	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0179585_3	PHROG	phrog_1356	holin	lysis
UHGV-0179585_3	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0179585_3	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0179585_4	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0179585_4	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0179585_5	PHROG	phrog_17957	NA	unknown function
UHGV-0179585_6	PHROG	phrog_31461	NA	unknown function
UHGV-0179585_7	PHROG	phrog_3909	NA	unknown function
UHGV-0179585_8	PHROG	phrog_38275	NA	unknown function
UHGV-0179585_8	UniRef90	UniRef90_A0A8F2VJ86	DNA gyrase subunit B	NA
UHGV-0179585_9	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179585_9	UniRef90	UniRef90_A0A1X9TP23	HNH endonuclease	NA
UHGV-0179585_9	eggNOG-mapper	1115515.EV102420_11_00240	HNH nucleases	NA
UHGV-0179585_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179585_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179585_10	PHROG	phrog_24041	NA	unknown function
UHGV-0179585_10	UniRef90	UniRef90_A0A1X9TP60	Serine acetyltransferase	NA
UHGV-0179585_10	eggNOG-mapper	906668.G8C7N9_9CAUD	NA	NA
UHGV-0179585_11	PHROG	phrog_12559	terminase small subunit	head and packaging
UHGV-0179585_11	UniRef90	UniRef90_Q63VV1	Putative exported protein	NA
UHGV-0179585_11	eggNOG-mapper	1115515.EV102420_11_00220	NA	NA
UHGV-0179585_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179585_12	UniRef90	UniRef90_A0A090V0X1	Putative terminase large subunit	NA
UHGV-0179585_12	eggNOG-mapper	1115515.EV102420_11_00210	Phage Terminase	NA
UHGV-0179585_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179585_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179585_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179585_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179585_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179585_13	UniRef90	UniRef90_A0A090V0Q9	Putative portal protein	NA
UHGV-0179585_13	eggNOG-mapper	1115515.EV102420_11_00200	Phage portal protein	NA
UHGV-0179585_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179585_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179585_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179585_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179585_14	KOfam	K06904	NA	NA
UHGV-0179585_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0179585_14	UniRef90	UniRef90_A0A482II40	Prohead protease	NA
UHGV-0179585_14	eggNOG-mapper	1115515.EV102420_11_00190	Caudovirus prohead serine protease	NA
UHGV-0179585_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0179585_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0179585_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0179585_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0179585_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179585_15	UniRef90	UniRef90_A0A286S1R4	Major capsid protein	NA
UHGV-0179585_15	eggNOG-mapper	1115515.EV102420_11_00180	capsid protein	NA
UHGV-0179585_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179585_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179585_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179585_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179585_16	PHROG	phrog_18204	NA	unknown function
UHGV-0179585_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0179585_17	UniRef90	UniRef90_A0A377ZGK2	Phage gp6-like head-tail connector protein	NA
UHGV-0179585_17	eggNOG-mapper	1115515.EV102420_11_00160	Phage gp6-like head-tail connector protein	NA
UHGV-0179585_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0179585_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0179585_18	PHROG	phrog_2612	NA	unknown function
UHGV-0179585_18	UniRef90	UniRef90_A0A8F4G2J7	HU family DNA-binding protein	NA
UHGV-0179585_18	eggNOG-mapper	1147143.K7P6F3_9CAUD	NA	NA
UHGV-0179585_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0179585_19	UniRef90	UniRef90_A0A7I0E463	Head-tail adaptor protein	NA
UHGV-0179585_19	eggNOG-mapper	1147150.K7PH08_9CAUD	Phage head-tail joining protein	NA
UHGV-0179585_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0179585_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0179585_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179585_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179585_20	UniRef90	UniRef90_UPI001F326D52	HK97 gp10 family phage protein	NA
UHGV-0179585_20	eggNOG-mapper	1147150.K7PM60_9CAUD	exonuclease activity	NA
UHGV-0179585_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179585_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0179585_20	Structural annotation	TIGR01725	NA	NA
UHGV-0179585_21	PHROG	phrog_78	tail terminator	connector
UHGV-0179585_21	UniRef90	UniRef90_A0A1X9TNY6	NA	NA
UHGV-0179585_21	eggNOG-mapper	10742.Q9MCV0_BPHK0	NA	NA
UHGV-0179585_21	Pfam	PF11367	NA	DUF3168
UHGV-0179585_21	Structural annotation	PF11367	NA	NA
UHGV-0179585_22	PHROG	phrog_158	major tail protein	tail
UHGV-0179585_22	UniRef90	UniRef90_A0A2J5A0S6	Phage tail protein	NA
UHGV-0179585_22	eggNOG-mapper	932213.SPM24T3_24191	Phage tail tube, TTP, lambda-like	NA
UHGV-0179585_22	Pfam	PF16460	Phage tail tube, TTP, lambda-like	Phage_TTP_11
UHGV-0179585_22	Structural annotation	PF16460, TIGR02241, COG5437	NA	NA
UHGV-0179585_23	PHROG	phrog_1749	tail assembly chaperone	tail
UHGV-0179585_23	UniRef90	UniRef90_UPI0005165ADE	phage tail assembly chaperone family protein, TAC	NA
UHGV-0179585_23	eggNOG-mapper	640513.Entas_3070	Phage tail assembly chaperone, TAC	NA
UHGV-0179585_23	Pfam	PF16459	Phage tail assembly chaperone, TAC	Phage_TAC_13
UHGV-0179585_23	Structural annotation	PF16459	NA	NA
UHGV-0179585_24	PHROG	phrog_337	tail protein	tail
UHGV-0179585_24	UniRef90	UniRef90_A0A8A7GDE6	Phage tail protein	NA
UHGV-0179585_24	eggNOG-mapper	932213.SPM24T3_24201	NA	NA
UHGV-0179585_25	PHROG	phrog_8032	NA	unknown function
UHGV-0179585_25	UniRef90	UniRef90_UPI001C451FAF	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0179585_25	eggNOG-mapper	520999.PROVALCAL_03987	NA	NA
UHGV-0179585_26	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0179585_26	UniRef90	UniRef90_A0A378EEN0	Prophage tail length tape measure	NA
UHGV-0179585_26	eggNOG-mapper	640513.Entas_3068	lytic transglycosylase activity	NA
UHGV-0179585_26	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0179585_26	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0179585_26	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0179585_27	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0179585_27	UniRef90	UniRef90_A0A6S4Y1R4	Membrane protein	NA
UHGV-0179585_27	eggNOG-mapper	158822.LH89_20565	NA	NA
UHGV-0179585_27	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0179585_28	PHROG	phrog_396	minor tail protein	tail
UHGV-0179585_28	UniRef90	UniRef90_A0A8B4UIF4	ArsR family transcriptional regulator	NA
UHGV-0179585_28	eggNOG-mapper	158822.LH89_20570	NA	NA
UHGV-0179585_28	Pfam	PF08875	NA	DUF1833
UHGV-0179585_28	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0179585_29	PHROG	phrog_329	minor tail protein	tail
UHGV-0179585_29	UniRef90	UniRef90_A0A8B4UHG3	Nitrite transporter	NA
UHGV-0179585_29	eggNOG-mapper	371042.NG99_23810	NA	NA
UHGV-0179585_29	Structural annotation	TIGR02219	NA	NA
UHGV-0179585_30	PHROG	phrog_469	tail protein	tail
UHGV-0179585_30	UniRef90	UniRef90_A0A486NR71	Putative kinase	NA
UHGV-0179585_30	eggNOG-mapper	573.JG24_11060	cellulase activity	NA
UHGV-0179585_30	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0179585_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0179585_30	Structural annotation	PF13550, NF040662, TIGR01683, COG2104	NA	NA
UHGV-0179585_31	PHROG	phrog_32929	NA	unknown function
UHGV-0179585_31	UniRef90	UniRef90_UPI00058F82B1	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0179585_31	eggNOG-mapper	371042.NG99_23230	biosynthesis protein	NA
UHGV-0179585_31	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0179585_31	COG	COG5434	Polygalacturonase	NA
UHGV-0179585_33	PHROG	phrog_7836	NA	unknown function
UHGV-0179585_34	PHROG	phrog_22560	tail protein	tail
UHGV-0179585_34	UniRef90	UniRef90_UPI0019D4B4C4	phage tail fiber protein	NA