UHGV-0179726

Genome information

Genome length 42,879 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179726
vOTU ID	vOTU-046685
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581733
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.55
Jumbo phage	No

Genome content
Genome length	42,879 bps
GC content	53.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	87.67%
Average CDS length	609.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179726_1	PHROG	phrog_27197	NA	unknown function
UHGV-0179726_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0179726_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0179726_4	PHROG	phrog_14970	NA	unknown function
UHGV-0179726_4	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0179726_4	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0179726_4	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0179726_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0179726_5	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0179726_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0179726_5	Structural annotation	PF05772	NA	NA
UHGV-0179726_7	PHROG	phrog_7566	NA	unknown function
UHGV-0179726_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179726_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179726_8	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0179726_8	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0179726_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179726_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179726_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179726_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179726_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0179726_9	PHROG	phrog_4973	NA	unknown function
UHGV-0179726_9	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0179726_9	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0179726_9	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0179726_9	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0179726_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179726_10	UniRef90	UniRef90_UPI00143119EB	replication initiator protein A	NA
UHGV-0179726_10	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0179726_10	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0179726_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0179726_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0179726_11	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0179726_11	eggNOG-mapper	1121013.P873_12640	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0179726_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0179726_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0179726_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0179726_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0179726_14	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0179726_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0179726_14	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0179726_14	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0179726_14	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0179726_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0179726_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0179726_14	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0179726_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0179726_15	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179726_15	UniRef90	UniRef90_A0A379C663	Holliday junction resolvase	NA
UHGV-0179726_15	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0179726_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0179726_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0179726_24	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-0179726_25	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0179726_28	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0179726_28	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0179726_28	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0179726_28	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0179726_29	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0179726_29	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0179726_31	PHROG	phrog_13256	NA	unknown function
UHGV-0179726_31	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0179726_32	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0179726_32	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0179726_33	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0179726_33	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0179726_33	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0179726_33	eggNOG-mapper	1120746.CCNL01000017_gene3150	Peptidase family M23	NA
UHGV-0179726_33	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0179726_33	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0179726_33	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0179726_34	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0179726_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0179726_34	Structural annotation	COG4675	NA	NA
UHGV-0179726_35	UniRef90	UniRef90_A0A1C5MZC0	NA	NA
UHGV-0179726_35	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0179726_35	Pfam	PF19789	NA	DUF6273
UHGV-0179726_35	Structural annotation	PF19789	NA	NA
UHGV-0179726_36	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0179726_36	PHROG	phrog_819	tail protein	tail
UHGV-0179726_36	UniRef90	UniRef90_UPI00164C9345	collagen-like protein	NA
UHGV-0179726_36	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0179726_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179726_37	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0179726_37	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0179726_37	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0179726_38	PHROG	phrog_13046	NA	unknown function
UHGV-0179726_38	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0179726_38	Structural annotation	PF20387	NA	NA
UHGV-0179726_39	PHROG	phrog_156	portal protein	head and packaging
UHGV-0179726_39	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0179726_39	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0179726_41	PHROG	phrog_371	major head protein	head and packaging
UHGV-0179726_41	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0179726_41	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0179726_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179726_42	PHROG	phrog_35275	NA	unknown function
UHGV-0179726_42	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0179726_45	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0179726_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0179726_45	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0179726_45	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0179726_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179726_45	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0179726_48	UniRef90	UniRef90_UPI0012ABADBF	Arc family DNA-binding protein	NA
UHGV-0179726_48	Structural annotation	PF08681	NA	NA
UHGV-0179726_49	PHROG	phrog_15863	NA	unknown function
UHGV-0179726_49	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0179726_49	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0179726_49	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0179726_51	Structural annotation	PF06531	NA	NA
UHGV-0179726_52	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0179726_52	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0179726_52	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0179726_52	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0179726_52	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0179726_53	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0179726_55	KOfam	K14059	int; integrase	NA
UHGV-0179726_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0179726_55	UniRef90	UniRef90_A0A542ARL8	Phage integrase family protein	NA
UHGV-0179726_55	eggNOG-mapper	1304866.K413DRAFT_1893	Belongs to the 'phage' integrase family	NA
UHGV-0179726_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179726_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179726_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0179726_56	PHROG	phrog_14556	NA	unknown function
UHGV-0179726_56	eggNOG-mapper	203119.Cthe_2752	Metallo-beta-lactamase domain protein	NA
UHGV-0179726_56	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0179726_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179726_57	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0179726_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179726_57	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179726_57	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0179726_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179726_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179726_58	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0179726_58	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0179726_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179726_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179726_58	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0179726_60	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0179726_60	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0179726_62	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0179726_62	PHROG	phrog_4433	NA	unknown function
UHGV-0179726_62	UniRef90	UniRef90_UPI00045B9709	collagen-like protein	NA
UHGV-0179726_62	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0179726_62	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179726_62	COG	COG5164	Transcription elongation factor SPT5	NA