UHGV-0179728

Genome information

Genome length 42,328 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179728
vOTU ID	vOTU-005213
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581735
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.12
Jumbo phage	No

Genome content
Genome length	42,328 bps
GC content	56.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.37%
Average CDS length	697.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179728_1	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0179728_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0179728_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0179728_2	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0179728_2	Structural annotation	PF10618	NA	NA
UHGV-0179728_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0179728_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0179728_4	PHROG	phrog_4105	NA	unknown function
UHGV-0179728_4	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0179728_6	PHROG	phrog_13256	NA	unknown function
UHGV-0179728_6	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0179728_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0179728_7	PHROG	phrog_435	endolysin	lysis
UHGV-0179728_7	UniRef90	UniRef90_A0A4V3BGY9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0179728_7	eggNOG-mapper	999413.HMPREF1094_01993	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0179728_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0179728_7	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0179728_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0179728_7	Structural annotation	PF01520, PF01832, NF038016, NF038140, NF041850, COG1705, COG0860, COG3807	NA	NA
UHGV-0179728_8	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0179728_8	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0179728_8	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-0179728_11	PHROG	phrog_22978	NA	unknown function
UHGV-0179728_11	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0179728_12	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0179728_12	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0179728_12	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0179728_12	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0179728_16	KOfam	K14059	int; integrase	NA
UHGV-0179728_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0179728_16	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0179728_16	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0179728_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179728_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179728_16	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0179728_21	UniRef90	UniRef90_UPI001967837D	helix-turn-helix domain-containing protein	NA
UHGV-0179728_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179728_21	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0179728_22	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0179728_22	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0179728_22	UniRef90	UniRef90_A0A1C6BBE2	Transcriptional repressor DicA	NA
UHGV-0179728_22	eggNOG-mapper	1226322.HMPREF1545_02925	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179728_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179728_22	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179728_25	Pfam	PF09943	NA	DUF2175
UHGV-0179728_26	PHROG	phrog_1123	NA	unknown function
UHGV-0179728_26	UniRef90	UniRef90_A0A174T199	DNA gyrase	NA
UHGV-0179728_26	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-0179728_27	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179728_27	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0179728_27	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0179728_27	Pfam	PF06378	NA	DUF1071
UHGV-0179728_27	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0179728_28	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179728_28	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0179728_28	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0179728_29	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0179728_29	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0179728_29	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0179728_29	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0179728_30	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179728_30	UniRef90	UniRef90_A0A7C6TX57	HNH endonuclease	NA
UHGV-0179728_30	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0179728_30	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0179728_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179728_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179728_31	UniRef90	UniRef90_A0A3D3Y0K5	Single-stranded DNA-binding protein	NA
UHGV-0179728_31	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0179728_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179728_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179728_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179728_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179728_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0179728_32	PHROG	phrog_15768	NA	unknown function
UHGV-0179728_32	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0179728_32	Pfam	PF19808	NA	DUF6291
UHGV-0179728_32	Structural annotation	PF19808	NA	NA
UHGV-0179728_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0179728_33	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0179728_33	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0179728_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0179728_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179728_34	UniRef90	UniRef90_A0A265Q747	AP2/ERF domain-containing protein	NA
UHGV-0179728_34	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0179728_35	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0179728_35	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0179728_35	UniRef90	UniRef90_A0A329UVF4	Thymidylate synthase (FAD)	NA
UHGV-0179728_35	eggNOG-mapper	1121406.JAEX01000007_gene2474	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0179728_35	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0179728_35	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0179728_35	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0179728_35	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0179728_37	PHROG	phrog_474	phosphofructokinase	other
UHGV-0179728_37	UniRef90	UniRef90_UPI00103054B4	NA	NA
UHGV-0179728_37	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0179728_37	Pfam	PF19905	NA	DUF6378
UHGV-0179728_37	Structural annotation	PF19905	NA	NA
UHGV-0179728_38	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0179728_38	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0179728_38	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0179728_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0179728_42	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0179728_45	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0179728_45	eggNOG-mapper	1118055.CAGU01000028_gene99	NA	NA
UHGV-0179728_45	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0179728_47	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0179728_47	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0179728_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179728_49	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0179728_49	UniRef90	UniRef90_R5AXD9	Conserved domain protein	NA
UHGV-0179728_49	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0179728_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179728_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179728_49	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0179728_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0179728_50	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0179728_50	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0179728_51	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0179728_51	Structural annotation	PF04327, NF011122, COG2868	NA	NA
UHGV-0179728_52	PHROG	phrog_13908	NA	unknown function
UHGV-0179728_52	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0179728_53	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0179728_53	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0179728_53	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-0179728_53	Pfam	PF13252	NA	DUF4043
UHGV-0179728_53	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0179728_53	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0179728_54	PHROG	phrog_15239	NA	unknown function
UHGV-0179728_55	PHROG	phrog_12105	NA	unknown function
UHGV-0179728_57	eggNOG-mapper	1384065.JAGS01000001_gene2507	domain, Protein	NA
UHGV-0179728_57	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0179728_57	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0179728_57	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA