UHGV-0179730

Genome information

Genome length 39,865 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179730
vOTU ID	vOTU-006691
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581737
BioSample	SAMN09781749
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.29
Jumbo phage	No

Genome content
Genome length	39,865 bps
GC content	51.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.27%
Average CDS length	581.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179730_2	PHROG	phrog_15303	NA	unknown function
UHGV-0179730_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0179730_4	PHROG	phrog_291	endolysin	lysis
UHGV-0179730_4	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0179730_4	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0179730_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179730_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0179730_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0179730_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0179730_7	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0179730_7	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0179730_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179730_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179730_7	COG	COG4926	Phage-related protein	NA
UHGV-0179730_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179730_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179730_8	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0179730_8	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0179730_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0179730_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179730_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179730_9	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0179730_9	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0179730_9	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0179730_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0179730_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0179730_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179730_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0179730_12	PHROG	phrog_88	major tail protein	tail
UHGV-0179730_12	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0179730_12	eggNOG-mapper	508419.F8J168_9CAUD	NA	NA
UHGV-0179730_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179730_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0179730_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179730_13	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0179730_13	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0179730_13	Structural annotation	TIGR01725	NA	NA
UHGV-0179730_14	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0179730_14	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0179730_15	PHROG	phrog_19734	NA	unknown function
UHGV-0179730_15	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0179730_15	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0179730_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179730_16	PHROG	phrog_749	NA	unknown function
UHGV-0179730_16	UniRef90	UniRef90_UPI00099504CB	phage head-tail connector protein	NA
UHGV-0179730_16	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0179730_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179730_17	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0179730_17	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0179730_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179730_17	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0179730_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179730_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179730_17	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179730_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179730_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179730_18	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-0179730_18	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0179730_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179730_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179730_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0179730_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179730_19	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0179730_19	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0179730_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179730_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179730_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179730_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179730_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179730_20	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0179730_20	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0179730_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179730_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179730_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0179730_21	PHROG	phrog_13845	NA	unknown function
UHGV-0179730_21	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0179730_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179730_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0179730_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179730_22	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0179730_22	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0179730_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179730_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179730_25	PHROG	phrog_3136	NA	unknown function
UHGV-0179730_25	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0179730_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0179730_25	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0179730_27	Structural annotation	PF04545	NA	NA
UHGV-0179730_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0179730_28	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0179730_28	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0179730_28	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0179730_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0179730_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0179730_28	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0179730_29	UniRef90	UniRef90_UPI001C009709	NA	NA
UHGV-0179730_30	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0179730_30	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0179730_30	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0179730_30	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0179730_30	Pfam	PF13614	AAA domain	AAA_31
UHGV-0179730_30	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0179730_30	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0179730_32	PHROG	phrog_6969	NA	unknown function
UHGV-0179730_32	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0179730_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0179730_32	Pfam	PF19481	NA	DUF6017
UHGV-0179730_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0179730_32	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0179730_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179730_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179730_33	UniRef90	UniRef90_A0A844DI52	Single-stranded DNA-binding protein	NA
UHGV-0179730_33	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0179730_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179730_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179730_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179730_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179730_33	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0179730_34	PHROG	phrog_7566	NA	unknown function
UHGV-0179730_34	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0179730_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0179730_37	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0179730_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0179730_38	PHROG	phrog_14970	NA	unknown function
UHGV-0179730_38	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0179730_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0179730_47	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0179730_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179730_48	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0179730_48	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0179730_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179730_48	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0179730_49	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0179730_53	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0179730_53	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0179730_53	UniRef90	UniRef90_E1VK86	Exonuclease domain in DNA-polymerase alpha and epsilon chain	NA
UHGV-0179730_53	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0179730_53	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0179730_53	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0179730_53	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0179730_53	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0179730_53	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0179730_56	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0179730_56	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0179730_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179730_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179730_56	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0179730_57	KOfam	K14059	int; integrase	NA
UHGV-0179730_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0179730_57	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0179730_57	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0179730_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0179730_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179730_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179730_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0179730_58	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0179730_58	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0179730_59	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179730_60	PHROG	phrog_16490	NA	unknown function
UHGV-0179730_61	PHROG	phrog_22984	NA	unknown function
UHGV-0179730_63	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0179730_63	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0179730_63	Structural annotation	PF10723	NA	NA