UHGV-0179760

Genome information

Genome length 19,651 bps

CDS count 24

Completeness 66.14% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179760
vOTU ID	vOTU-029107
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_569869
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	66.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.63
Jumbo phage	No

Genome content
Genome length	19,651 bps
GC content	37.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	91.65%
Average CDS length	750.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179760_2	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0179760_2	UniRef90	UniRef90_R5MSZ3	Major head protein	NA
UHGV-0179760_2	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0179760_2	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0179760_3	PHROG	phrog_2248	tail protein	tail
UHGV-0179760_3	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0179760_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0179760_4	UniRef90	UniRef90_A0A1W7LXQ5	Putative Connector protein	NA
UHGV-0179760_4	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0179760_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0179760_4	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0179760_5	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0179760_6	COG	COG0729	Outer membrane translocation and assembly module TamA	NA
UHGV-0179760_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0179760_7	UniRef90	UniRef90_A0A843FWE9	Phage DNA encapsidation protein	NA
UHGV-0179760_7	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0179760_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0179760_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179760_12	UniRef90	UniRef90_A0A174TTI4	Cell wall binding repeat-containing protein	NA
UHGV-0179760_12	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0179760_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0179760_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0179760_15	eggNOG-mapper	1410628.JNKS01000023_gene1774	NlpC p60 family protein	NA
UHGV-0179760_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0179760_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0179760_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0179760_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0179760_16	UniRef90	UniRef90_A0A843HUC7	DNA-directed DNA polymerase	NA
UHGV-0179760_16	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0179760_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0179760_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0179760_18	Structural annotation	PF17427	NA	NA