UHGV-0179779

Genome information

Genome length 37,034 bps

CDS count 55

Completeness 95.58% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179779
vOTU ID	vOTU-070101
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582859
BioSample	SAMN09781737
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.95
Jumbo phage	No

Genome content
Genome length	37,034 bps
GC content	45.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.07%
Average CDS length	621.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179779_1	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0179779_1	PHROG	phrog_819	tail protein	tail
UHGV-0179779_1	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-0179779_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179779_2	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0179779_2	PHROG	phrog_17196	kinase	other
UHGV-0179779_2	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0179779_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179779_2	Structural annotation	PF13619	NA	NA
UHGV-0179779_4	PHROG	phrog_18190	NA	unknown function
UHGV-0179779_4	UniRef90	UniRef90_R7BGL9	NA	NA
UHGV-0179779_4	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0179779_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0179779_5	PHROG	phrog_1194	NA	unknown function
UHGV-0179779_5	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0179779_5	Pfam	PF20458	NA	DUF6711
UHGV-0179779_5	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0179779_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179779_6	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0179779_6	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0179779_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0179779_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0179779_7	PHROG	phrog_8355	NA	unknown function
UHGV-0179779_7	UniRef90	UniRef90_A0A2Y9BGF3	Bacteriophage Gp15 protein	NA
UHGV-0179779_7	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0179779_8	PHROG	phrog_8300	NA	unknown function
UHGV-0179779_8	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0179779_8	Structural annotation	PF06854	NA	NA
UHGV-0179779_9	PHROG	phrog_820	major tail protein	tail
UHGV-0179779_9	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0179779_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0179779_10	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0179779_10	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0179779_10	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0179779_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0179779_10	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0179779_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0179779_11	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0179779_12	PHROG	phrog_8710	NA	unknown function
UHGV-0179779_12	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0179779_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0179779_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0179779_13	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0179779_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0179779_14	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0179779_14	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0179779_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0179779_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0179779_15	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0179779_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0179779_16	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0179779_16	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0179779_16	Pfam	PF14359	NA	DUF4406
UHGV-0179779_16	Structural annotation	PF14359	NA	NA
UHGV-0179779_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0179779_18	UniRef90	UniRef90_A0A3D5M147	Minor capsid protein	NA
UHGV-0179779_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0179779_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0179779_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0179779_18	Structural annotation	PF06152	NA	NA
UHGV-0179779_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0179779_19	UniRef90	UniRef90_A0A3D5M0W8	Capsid protein	NA
UHGV-0179779_19	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0179779_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179779_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179779_20	PHROG	phrog_10250	NA	unknown function
UHGV-0179779_20	UniRef90	UniRef90_A0A3D5M0W3	Terminase	NA
UHGV-0179779_20	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0179779_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179779_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0179779_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0179779_21	UniRef90	UniRef90_A0A6I5SR27	Helix-turn-helix domain-containing protein	NA
UHGV-0179779_21	eggNOG-mapper	357809.Cphy_2972	transposase activity	NA
UHGV-0179779_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0179779_21	Structural annotation	PF07141	NA	NA
UHGV-0179779_22	UniRef90	UniRef90_R6BYX9	Transcriptional activator	NA
UHGV-0179779_22	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0179779_23	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0179779_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0179779_23	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0179779_23	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0179779_23	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0179779_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179779_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0179779_23	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0179779_25	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0179779_25	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0179779_25	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0179779_26	PHROG	phrog_419	NA	unknown function
UHGV-0179779_26	UniRef90	UniRef90_D7RWI0	Gp56	NA
UHGV-0179779_26	eggNOG-mapper	33035.JPJF01000093_gene2254	NA	NA
UHGV-0179779_26	Structural annotation	PF14083	NA	NA
UHGV-0179779_27	UniRef90	UniRef90_UPI001D07A23A	helix-turn-helix domain-containing protein	NA
UHGV-0179779_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0179779_28	eggNOG-mapper	1304866.K413DRAFT_1210	NA	NA
UHGV-0179779_28	Structural annotation	NF041909	NA	NA
UHGV-0179779_32	UniRef90	UniRef90_A0A6L5YG44	NA	NA
UHGV-0179779_32	eggNOG-mapper	1235800.C819_00236	NA	NA
UHGV-0179779_32	Pfam	PF14199	NA	DUF4317
UHGV-0179779_32	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0179779_33	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179779_33	UniRef90	UniRef90_A0A373K1C3	NA	NA
UHGV-0179779_33	eggNOG-mapper	1321782.HMPREF1986_00323	NA	NA
UHGV-0179779_33	Pfam	PF12961	NA	DUF3850
UHGV-0179779_33	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0179779_34	Structural annotation	PF06257, NF037951, COG4466	NA	NA
UHGV-0179779_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0179779_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0179779_36	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0179779_36	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0179779_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0179779_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0179779_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0179779_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0179779_38	UniRef90	UniRef90_A0A6L5YHY2	Sarcolemmal membrane-associated protein	NA
UHGV-0179779_38	eggNOG-mapper	1235792.C808_01059	NA	NA
UHGV-0179779_39	eggNOG-mapper	397287.C807_03473	NA	NA
UHGV-0179779_40	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0179779_40	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0179779_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0179779_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0179779_41	UniRef90	UniRef90_A0A3D5M0W6	RNase H type-1 domain-containing protein	NA
UHGV-0179779_41	eggNOG-mapper	1469948.JPNB01000001_gene1575	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0179779_41	Pfam	PF00075	RNase H	RNase_H
UHGV-0179779_41	COG	COG0328	Ribonuclease HI	NA
UHGV-0179779_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0179779_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179779_42	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0179779_42	Structural annotation	PF01446	NA	NA
UHGV-0179779_44	UniRef90	UniRef90_A0A373K1C9	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0179779_46	UniRef90	UniRef90_A0A417QIK9	HTH cro/C1-type domain-containing protein	NA
UHGV-0179779_46	eggNOG-mapper	1304866.K413DRAFT_0802	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0179779_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0179779_50	UniRef90	UniRef90_A0A7U9RSM2	HTH cro/C1-type domain-containing protein	NA
UHGV-0179779_50	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0179779_50	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0179779_51	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0179779_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179779_51	UniRef90	UniRef90_A0A3R6AJC2	XRE family transcriptional regulator	NA
UHGV-0179779_51	eggNOG-mapper	1235798.C817_02945	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179779_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179779_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179779_51	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0179779_52	PHROG	phrog_87	metallo-protease	other
UHGV-0179779_52	UniRef90	UniRef90_A0A3D5M0U7	Peptidase_M78 domain-containing protein	NA
UHGV-0179779_52	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0179779_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0179779_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0179779_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0179779_54	KOfam	K14059	int; integrase	NA
UHGV-0179779_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0179779_54	UniRef90	UniRef90_A0A417QI45	Tyr recombinase domain-containing protein	NA
UHGV-0179779_54	eggNOG-mapper	1232453.BAIF02000110_gene768	Phage integrase family	NA
UHGV-0179779_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179779_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179779_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0179779_55	KOfam	K02847	waaL, rfaL; O-antigen ligase [EC:2.4.1.-]	NA
UHGV-0179779_55	UniRef90	UniRef90_A0A417QK23	O-antigen ligase domain-containing protein	NA
UHGV-0179779_55	eggNOG-mapper	1469948.JPNB01000002_gene3513	O-Antigen ligase	NA
UHGV-0179779_55	Pfam	PF04932	O-Antigen ligase	Wzy_C