UHGV-0179837

Genome information

Genome length 23,416 bps

CDS count 32

Completeness 64.04% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179837
vOTU ID	vOTU-029111
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591901
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.75
Jumbo phage	No

Genome content
Genome length	23,416 bps
GC content	55.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.66%
Average CDS length	688.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179837_2	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0179837_2	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0179837_2	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0179837_3	PHROG	phrog_1029	NA	unknown function
UHGV-0179837_3	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0179837_3	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0179837_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179837_4	UniRef90	UniRef90_A0A4U4E400	Endonuclease (Fragment)	NA
UHGV-0179837_4	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0179837_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0179837_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0179837_5	Structural annotation	PF00412	NA	NA
UHGV-0179837_6	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179837_6	UniRef90	UniRef90_A0A1C5ZN34	AAA domain-containing protein	NA
UHGV-0179837_6	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0179837_6	Pfam	PF13479	AAA domain	AAA_24
UHGV-0179837_6	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0179837_8	PHROG	phrog_18107	NA	unknown function
UHGV-0179837_8	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-0179837_8	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0179837_8	Structural annotation	PF05037	NA	NA
UHGV-0179837_9	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0179837_9	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0179837_9	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0179837_10	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179837_10	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0179837_10	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0179837_10	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0179837_12	PHROG	phrog_6568	NA	unknown function
UHGV-0179837_12	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0179837_13	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179837_13	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179837_13	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0179837_14	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0179837_14	UniRef90	UniRef90_UPI001D01EB7C	helix-turn-helix domain-containing protein	NA
UHGV-0179837_14	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0179837_14	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0179837_14	Structural annotation	PF07141	NA	NA
UHGV-0179837_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179837_15	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0179837_15	UniRef90	UniRef90_R5AG08	Phage terminase	NA
UHGV-0179837_15	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0179837_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179837_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0179837_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179837_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179837_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179837_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0179837_16	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-0179837_16	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0179837_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179837_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0179837_17	UniRef90	UniRef90_UPI0006832D02	phage minor capsid protein	NA
UHGV-0179837_17	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-0179837_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0179837_17	COG	COG2369	NA	NA
UHGV-0179837_17	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0179837_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179837_19	UniRef90	UniRef90_UPI001C1258D3	phage scaffolding protein	NA
UHGV-0179837_19	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0179837_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179837_19	Structural annotation	PF06810	NA	NA
UHGV-0179837_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0179837_20	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0179837_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0179837_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0179837_22	PHROG	phrog_3366	NA	unknown function
UHGV-0179837_22	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0179837_22	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0179837_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0179837_23	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0179837_23	eggNOG-mapper	632245.CLP_1652	Minor capsid protein	NA
UHGV-0179837_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0179837_23	Structural annotation	PF11114	NA	NA
UHGV-0179837_24	PHROG	phrog_3266	tail completion	connector
UHGV-0179837_24	UniRef90	UniRef90_UPI000F637EFF	chloramphenicol resistance protein	NA
UHGV-0179837_24	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0179837_24	Structural annotation	PF12691	NA	NA
UHGV-0179837_25	PHROG	phrog_820	major tail protein	tail
UHGV-0179837_25	eggNOG-mapper	663278.Ethha_0099	NA	NA
UHGV-0179837_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0179837_26	Structural annotation	PF10666	NA	NA
UHGV-0179837_27	PHROG	phrog_706	NA	unknown function
UHGV-0179837_27	UniRef90	UniRef90_UPI0006828F20	Gp15 family bacteriophage protein	NA
UHGV-0179837_27	eggNOG-mapper	742723.HMPREF9477_00898	Bacteriophage Gp15 protein	NA
UHGV-0179837_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0179837_27	Structural annotation	PF06854	NA	NA
UHGV-0179837_28	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0179837_28	eggNOG-mapper	1122146.AUHP01000010_gene1066	Phage tail tape measure protein	NA
UHGV-0179837_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179837_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179837_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0179837_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0179837_29	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179837_30	PHROG	phrog_18110	NA	unknown function
UHGV-0179837_30	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-0179837_30	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0179837_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179837_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179837_30	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0179837_31	Structural annotation	PF05382, COG3738	NA	NA
UHGV-0179837_32	UniRef90	UniRef90_UPI000C854EB7	BppU family phage baseplate upper protein	NA
UHGV-0179837_32	Pfam	PF10651	BppU N-terminal domain	BppU_N