UHGV-0179850

Genome information

Genome length 22,188 bps

CDS count 26

Completeness 53.55% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179850
vOTU ID	vOTU-029112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_564700
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.87
Jumbo phage	No

Genome content
Genome length	22,188 bps
GC content	57.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	89.21%
Average CDS length	762.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179850_1	PHROG	phrog_21825	endolysin	lysis
UHGV-0179850_1	UniRef90	UniRef90_UPI0011066B38	peptidoglycan-binding protein	NA
UHGV-0179850_1	eggNOG-mapper	479437.Elen_2649	CHAP domain	NA
UHGV-0179850_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0179850_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0179850_1	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0179850_3	PHROG	phrog_443	holin	lysis
UHGV-0179850_3	UniRef90	UniRef90_A0A1H4JBG1	Phage r1t holin	NA
UHGV-0179850_3	eggNOG-mapper	1123263.AUKY01000015_gene1627	Putative lactococcus lactis phage r1t holin	NA
UHGV-0179850_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0179850_3	Structural annotation	PF16945	NA	NA
UHGV-0179850_5	PHROG	phrog_30034	NA	unknown function
UHGV-0179850_5	UniRef90	UniRef90_W4N895	Streptogrisin	NA
UHGV-0179850_5	eggNOG-mapper	316274.Haur_2431	chitin catabolic process	NA
UHGV-0179850_5	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0179850_5	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0179850_7	PHROG	phrog_1887	tail protein	tail
UHGV-0179850_7	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0179850_7	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-0179850_7	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0179850_8	UniRef90	UniRef90_A0A5K1JBQ1	Fibronectin type-III domain-containing protein	NA
UHGV-0179850_8	eggNOG-mapper	1504822.CCNO01000015_gene633	cellulase activity	NA
UHGV-0179850_8	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0179850_8	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0179850_9	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0179850_9	UniRef90	UniRef90_A0A5K1JCK1	Chromosome partition protein Smc	NA
UHGV-0179850_9	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0179850_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179850_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179850_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0179850_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0179850_10	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0179850_13	PHROG	phrog_290	minor tail protein	tail
UHGV-0179850_13	UniRef90	UniRef90_UPI001C93CFFF	phage tail tube protein	NA
UHGV-0179850_13	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0179850_13	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0179850_14	Structural annotation	PF06141	NA	NA
UHGV-0179850_15	Structural annotation	TIGR02215	NA	NA
UHGV-0179850_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179850_16	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-0179850_16	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-0179850_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179850_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179850_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179850_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179850_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179850_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179850_17	UniRef90	UniRef90_A0A5K1JFC3	ATP-dependent Clp protease proteolytic subunit 1	NA
UHGV-0179850_17	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-0179850_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179850_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179850_17	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0179850_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179850_18	UniRef90	UniRef90_A0A5K1ISP8	Phage portal protein	NA
UHGV-0179850_18	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0179850_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179850_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179850_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179850_19	UniRef90	UniRef90_UPI0012DD2CF8	phage portal protein	NA
UHGV-0179850_19	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0179850_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179850_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179850_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179850_20	UniRef90	UniRef90_A0A5K1IZ70	Phage Terminase	NA
UHGV-0179850_20	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0179850_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179850_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179850_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179850_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179850_21	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-0179850_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179850_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0179850_24	eggNOG-mapper	1095770.CAHE01000085_gene1290	NA	NA