UHGV-0179881

Genome information

Genome length 44,754 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179881
vOTU ID	vOTU-046689
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_573828
BioSample	SAMN07449071
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.39
Jumbo phage	No

Genome content
Genome length	44,754 bps
GC content	40.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.54%
Average CDS length	572.96 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179881_2	Structural annotation	PF17888	NA	NA
UHGV-0179881_8	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0179881_8	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0179881_9	Structural annotation	NF010187	NA	NA
UHGV-0179881_10	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0179881_10	UniRef90	UniRef90_A0A7U9JR13	DNA/RNA helicase, superfamily II	NA
UHGV-0179881_10	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0179881_10	Pfam	PF06048	NA	DUF927
UHGV-0179881_10	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0179881_10	COG	COG5519	NA	NA
UHGV-0179881_10	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0179881_11	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0179881_11	PHROG	phrog_11992	NA	unknown function
UHGV-0179881_11	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0179881_11	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0179881_11	PADLOC	drt-cluster192	DRT	DRT
UHGV-0179881_11	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0179881_11	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0179881_11	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0179881_12	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0179881_12	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0179881_12	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0179881_12	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0179881_12	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0179881_13	PHROG	phrog_18107	NA	unknown function
UHGV-0179881_13	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0179881_13	Structural annotation	PF05037	NA	NA
UHGV-0179881_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0179881_14	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0179881_14	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0179881_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0179881_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0179881_15	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0179881_16	Structural annotation	NF011879	NA	NA
UHGV-0179881_20	AcrCatalog	cluster_17974	NA	NA
UHGV-0179881_21	PHROG	phrog_6058	NA	unknown function
UHGV-0179881_21	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0179881_21	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0179881_22	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0179881_22	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-0179881_22	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0179881_22	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0179881_22	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0179881_22	COG	COG3617	Prophage antirepressor	NA
UHGV-0179881_22	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0179881_25	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0179881_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179881_25	UniRef90	UniRef90_A0A1C6C9V1	Predicted transcriptional regulator	NA
UHGV-0179881_25	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-0179881_25	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179881_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179881_25	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0179881_27	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0179881_27	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0179881_27	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0179881_27	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0179881_27	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0179881_28	KOfam	K14059	int; integrase	NA
UHGV-0179881_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0179881_28	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0179881_28	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0179881_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179881_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179881_28	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0179881_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0179881_29	PHROG	phrog_6745	endolysin	lysis
UHGV-0179881_29	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0179881_29	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0179881_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0179881_29	Pfam	PF05257	CHAP domain	CHAP
UHGV-0179881_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0179881_29	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0179881_29	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0179881_30	Structural annotation	NF040910	NA	NA
UHGV-0179881_32	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0179881_32	PHROG	phrog_819	tail protein	tail
UHGV-0179881_32	UniRef90	UniRef90_A0A3A6GQL7	Fibronectin type-III domain-containing protein	NA
UHGV-0179881_32	eggNOG-mapper	1508644.SFBmNL_00815	NA	NA
UHGV-0179881_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179881_32	Pfam	PF19789	NA	DUF6273
UHGV-0179881_32	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0179881_33	PHROG	phrog_18444	NA	unknown function
UHGV-0179881_34	PHROG	phrog_6616	tail protein	tail
UHGV-0179881_34	UniRef90	UniRef90_A0A352BLY8	Peptidase S74 domain-containing protein	NA
UHGV-0179881_34	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0179881_34	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0179881_35	PHROG	phrog_1194	NA	unknown function
UHGV-0179881_35	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0179881_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0179881_36	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0179881_36	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0179881_36	COG	COG1511	NA	NA
UHGV-0179881_36	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0179881_37	PHROG	phrog_706	NA	unknown function
UHGV-0179881_37	UniRef90	UniRef90_UPI001D1485B4	bacteriophage Gp15 family protein	NA
UHGV-0179881_37	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0179881_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0179881_37	Structural annotation	PF06854	NA	NA
UHGV-0179881_38	PHROG	phrog_11299	NA	unknown function
UHGV-0179881_38	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0179881_38	Structural annotation	PF10666	NA	NA
UHGV-0179881_39	PHROG	phrog_3099	NA	unknown function
UHGV-0179881_39	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0179881_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0179881_40	PHROG	phrog_3266	tail completion	connector
UHGV-0179881_40	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0179881_40	Structural annotation	PF12691	NA	NA
UHGV-0179881_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0179881_41	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0179881_41	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0179881_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0179881_41	Structural annotation	PF11114	NA	NA
UHGV-0179881_42	PHROG	phrog_3366	NA	unknown function
UHGV-0179881_42	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0179881_42	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0179881_43	PHROG	phrog_18218	NA	unknown function
UHGV-0179881_43	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0179881_43	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0179881_43	Structural annotation	PF06946	NA	NA
UHGV-0179881_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0179881_44	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0179881_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0179881_45	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0179881_45	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0179881_45	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0179881_45	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0179881_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0179881_46	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0179881_46	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0179881_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0179881_47	PHROG	phrog_28802	NA	unknown function
UHGV-0179881_47	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0179881_48	PHROG	phrog_20016	NA	unknown function
UHGV-0179881_48	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0179881_48	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0179881_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179881_49	PHROG	phrog_16490	NA	unknown function
UHGV-0179881_49	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0179881_50	PHROG	phrog_22984	NA	unknown function
UHGV-0179881_51	PHROG	phrog_21718	NA	unknown function
UHGV-0179881_51	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0179881_52	PHROG	phrog_31631	NA	unknown function
UHGV-0179881_54	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0179881_54	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0179881_55	PHROG	phrog_3754	NA	unknown function
UHGV-0179881_55	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0179881_56	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0179881_56	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0179881_56	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0179881_56	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0179881_56	COG	COG2369	NA	NA
UHGV-0179881_56	Structural annotation	PF06152	NA	NA
UHGV-0179881_58	PHROG	phrog_2310	NA	unknown function
UHGV-0179881_59	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0179881_60	PHROG	phrog_533	portal protein	head and packaging
UHGV-0179881_60	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0179881_60	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0179881_60	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0179881_61	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0179881_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0179881_62	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0179881_62	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0179881_62	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0179881_62	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0179881_62	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0179881_62	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0179881_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0179881_62	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0179881_63	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0179881_63	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0179881_63	UniRef90	UniRef90_A0A416ZL36	Terminase small subunit	NA
UHGV-0179881_63	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0179881_63	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0179881_63	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0179881_63	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0179881_64	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0179881_64	AcrCatalog	cluster_11670	NA	NA
UHGV-0179881_67	PHROG	phrog_2776	NA	unknown function
UHGV-0179881_67	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0179881_67	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0179881_70	Structural annotation	PF06107, COG4481	NA	NA