UHGV-0179900

Genome information

Genome length 38,853 bps

CDS count 62

Completeness 98.14% (high-quality)

geNomad score 0.9532

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179900
vOTU ID	vOTU-072370
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576756
BioSample	SAMN07501159
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9532
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.78
Jumbo phage	No

Genome content
Genome length	38,853 bps
GC content	29.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	89.65%
Average CDS length	564.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179900_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0179900_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0179900_1	UniRef90	UniRef90_UPI0018A03072	recombinase family protein	NA
UHGV-0179900_1	eggNOG-mapper	1408422.JHYF01000007_gene1308	Recombinase	NA
UHGV-0179900_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0179900_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0179900_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0179900_2	PHROG	phrog_87	metallo-protease	other
UHGV-0179900_2	UniRef90	UniRef90_UPI00189CC494	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0179900_2	eggNOG-mapper	929506.CbC4_1185	Zn peptidase	NA
UHGV-0179900_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0179900_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0179900_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0179900_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179900_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0179900_3	UniRef90	UniRef90_UPI0015D48A11	transcriptional regulator	NA
UHGV-0179900_3	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0179900_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0179900_3	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0179900_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179900_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0179900_4	UniRef90	UniRef90_UPI0015D48A11	transcriptional regulator	NA
UHGV-0179900_4	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0179900_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0179900_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179900_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0179900_5	UniRef90	UniRef90_UPI000E12259A	NA	NA
UHGV-0179900_5	eggNOG-mapper	1239381.K4JXN9_9CAUD	NA	NA
UHGV-0179900_5	Pfam	PF05339	NA	DUF739
UHGV-0179900_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0179900_9	eggNOG-mapper	1196322.A370_05749	NA	NA
UHGV-0179900_12	PHROG	phrog_3497	NA	unknown function
UHGV-0179900_12	UniRef90	UniRef90_UPI000C0829E3	HNH endonuclease	NA
UHGV-0179900_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179900_12	Structural annotation	COG5126	NA	NA
UHGV-0179900_14	PHROG	phrog_1389	NA	unknown function
UHGV-0179900_14	UniRef90	UniRef90_A0A3P6KVP0	NA	NA
UHGV-0179900_14	eggNOG-mapper	632245.CLP_2637	NA	NA
UHGV-0179900_14	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0179900_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179900_17	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0179900_17	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0179900_17	Structural annotation	PF21578	NA	NA
UHGV-0179900_19	Structural annotation	PF14058	NA	NA
UHGV-0179900_20	PHROG	phrog_8470	NA	unknown function
UHGV-0179900_20	UniRef90	UniRef90_UPI00189E1BD8	PcfJ domain-containing protein	NA
UHGV-0179900_20	eggNOG-mapper	632245.CLP_1619	PcfJ-like protein	NA
UHGV-0179900_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0179900_20	Structural annotation	PF14284	NA	NA
UHGV-0179900_21	PHROG	phrog_15609	NA	unknown function
UHGV-0179900_21	UniRef90	UniRef90_UPI00189DA5C3	NA	NA
UHGV-0179900_21	eggNOG-mapper	1395513.P343_08065	NA	NA
UHGV-0179900_21	Pfam	PF11300	NA	DUF3102
UHGV-0179900_21	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0179900_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0179900_23	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0179900_29	eggNOG-mapper	999411.HMPREF1092_00905	NA	NA
UHGV-0179900_30	eggNOG-mapper	1196322.A370_02064	NA	NA
UHGV-0179900_31	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0179900_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0179900_32	UniRef90	UniRef90_A0A0D8IFD7	Phage transcriptional activator, RinA family	NA
UHGV-0179900_32	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0179900_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0179900_32	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0179900_33	KOfam	K12805	NLRC4, CARD12; NLR family CARD domain-containing protein 4	NA
UHGV-0179900_33	PHROG	phrog_18297	NA	unknown function
UHGV-0179900_33	UniRef90	UniRef90_UPI0005E07E70	NACHT domain-containing protein	NA
UHGV-0179900_33	eggNOG-mapper	431943.CKL_1872	Nacht domain	NA
UHGV-0179900_33	Pfam	PF05729	NACHT domain	NACHT
UHGV-0179900_33	COG	COG5635	Predicted NTPase, NACHT family domain	NA
UHGV-0179900_33	Structural annotation	PF20702, MF_00553, NF001624, COG5635	NA	NA
UHGV-0179900_34	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0179900_34	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0179900_34	UniRef90	UniRef90_UPI001896B28B	DNA adenine methylase	NA
UHGV-0179900_34	eggNOG-mapper	318464.IO99_03725	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0179900_34	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0179900_34	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0179900_34	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0179900_34	COG	COG0338	DNA-adenine methylase	NA
UHGV-0179900_34	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0179900_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0179900_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179900_36	UniRef90	UniRef90_UPI0018973E8C	HNH endonuclease	NA
UHGV-0179900_36	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0179900_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179900_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179900_37	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0179900_37	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-0179900_37	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0179900_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179900_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0179900_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179900_38	UniRef90	UniRef90_UPI000C07C8AB	terminase large subunit	NA
UHGV-0179900_38	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0179900_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179900_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179900_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179900_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0179900_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179900_39	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0179900_39	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0179900_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179900_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179900_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179900_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179900_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179900_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179900_40	UniRef90	UniRef90_UPI000C07928B	Clp protease ClpP	NA
UHGV-0179900_40	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0179900_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179900_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179900_40	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0179900_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179900_41	UniRef90	UniRef90_UPI00189BAA04	phage major capsid protein	NA
UHGV-0179900_41	eggNOG-mapper	1415774.U728_1252	Phage capsid family	NA
UHGV-0179900_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179900_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179900_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179900_41	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179900_42	PHROG	phrog_749	NA	unknown function
UHGV-0179900_42	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0179900_43	PHROG	phrog_19734	NA	unknown function
UHGV-0179900_43	UniRef90	UniRef90_UPI00058D8276	phage head closure protein	NA
UHGV-0179900_43	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0179900_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179900_44	UniRef90	UniRef90_UPI0018984D6A	HK97 gp10 family phage protein	NA
UHGV-0179900_44	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179900_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0179900_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0179900_44	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0179900_45	PHROG	phrog_78	tail terminator	connector
UHGV-0179900_45	eggNOG-mapper	1211817.CCAT010000053_gene2136	NA	NA
UHGV-0179900_45	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0179900_46	PHROG	phrog_88	major tail protein	tail
UHGV-0179900_46	UniRef90	UniRef90_UPI00058C0646	tail protein	NA
UHGV-0179900_46	eggNOG-mapper	203119.Cthe_1713	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0179900_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179900_46	COG	COG5492	NA	NA
UHGV-0179900_46	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0179900_47	PHROG	phrog_2115	tail protein	tail
UHGV-0179900_47	eggNOG-mapper	573061.Clocel_0791	NA	NA
UHGV-0179900_47	Structural annotation	PF11836	NA	NA
UHGV-0179900_48	PHROG	phrog_10988	NA	unknown function
UHGV-0179900_48	UniRef90	UniRef90_UPI00099A40D6	phage tail assembly chaperone	NA
UHGV-0179900_49	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0179900_49	UniRef90	UniRef90_UPI001897835A	phage tail tape measure protein	NA
UHGV-0179900_49	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0179900_49	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0179900_49	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0179900_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0179900_50	UniRef90	UniRef90_UPI0015B3D59E	phage tail family protein	NA
UHGV-0179900_50	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0179900_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0179900_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0179900_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0179900_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0179900_51	UniRef90	UniRef90_UPI001899A9BD	phage tail protein	NA
UHGV-0179900_51	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0179900_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0179900_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0179900_51	COG	COG4926	Phage-related protein	NA
UHGV-0179900_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0179900_52	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0179900_52	PHROG	phrog_19519	neck protein	connector
UHGV-0179900_52	UniRef90	UniRef90_UPI0012B9F741	polysaccharide deacetylase family protein	NA
UHGV-0179900_52	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0179900_52	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0179900_52	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0179900_52	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0179900_53	PHROG	phrog_1863	NA	unknown function
UHGV-0179900_53	eggNOG-mapper	632245.CLP_2896	NA	NA
UHGV-0179900_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0179900_55	PHROG	phrog_3088	amidase	lysis
UHGV-0179900_55	UniRef90	UniRef90_UPI0018A0546F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0179900_55	eggNOG-mapper	1280689.AUJC01000003_gene983	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0179900_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0179900_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0179900_55	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0179900_55	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0179900_57	eggNOG-mapper	457396.CSBG_01599	NA	NA
UHGV-0179900_58	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0179900_58	PHROG	phrog_3502	NA	unknown function
UHGV-0179900_58	UniRef90	UniRef90_UPI000C08B944	transcriptional regulator	NA
UHGV-0179900_58	eggNOG-mapper	1294142.CINTURNW_4512	LexA DNA binding domain	NA
UHGV-0179900_58	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0179900_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179900_58	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0179900_62	eggNOG-mapper	871963.Desdi_1272	NA	NA