UHGV-0179926

Genome information

Genome length 41,347 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9563

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179926
vOTU ID	vOTU-002995
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582517
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9563
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.43
Jumbo phage	No

Genome content
Genome length	41,347 bps
GC content	68.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.53%
Average CDS length	526.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179926_1	PHROG	phrog_15002	NA	unknown function
UHGV-0179926_1	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0179926_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0179926_4	PHROG	phrog_88	major tail protein	tail
UHGV-0179926_4	UniRef90	UniRef90_A0A285G757	Phage major tail protein, phi13 family	NA
UHGV-0179926_4	eggNOG-mapper	1111121.HMPREF1247_0016	phage major tail protein, phi13 family	NA
UHGV-0179926_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0179926_4	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0179926_5	eggNOG-mapper	1384066.JAGT01000001_gene933	NA	NA
UHGV-0179926_5	Structural annotation	PF20765	NA	NA
UHGV-0179926_6	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0179926_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0179926_7	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-0179926_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0179926_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179926_8	PHROG	phrog_5223	neck protein	connector
UHGV-0179926_8	UniRef90	UniRef90_A0A1L8I5X8	DNA-packaging protein	NA
UHGV-0179926_8	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-0179926_8	Structural annotation	TIGR01560	NA	NA
UHGV-0179926_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179926_9	UniRef90	UniRef90_C9LCN3	Phage major capsid protein, HK97 family	NA
UHGV-0179926_9	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0179926_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179926_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179926_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179926_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179926_10	KOfam	K06904	NA	NA
UHGV-0179926_10	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0179926_10	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-0179926_10	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-0179926_10	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0179926_10	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0179926_10	COG	COG3740	Phage head maturation protease	NA
UHGV-0179926_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0179926_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179926_11	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-0179926_11	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-0179926_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179926_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179926_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179926_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179926_12	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-0179926_12	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-0179926_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179926_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179926_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179926_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179926_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179926_14	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179926_14	UniRef90	UniRef90_A0A3B9G153	HNH endonuclease	NA
UHGV-0179926_14	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-0179926_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179926_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179926_16	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0179926_18	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0179926_18	UniRef90	UniRef90_A0A2V2D3P8	Antirestriction protein ArdA	NA
UHGV-0179926_18	eggNOG-mapper	1034345.CAEM01000050_gene1510	Antirestriction protein (ArdA)	NA
UHGV-0179926_18	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0179926_18	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0179926_18	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0179926_18	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0179926_23	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0179926_23	UniRef90	UniRef90_A0A1Y4BCD8	HTH cro/C1-type domain-containing protein	NA
UHGV-0179926_23	eggNOG-mapper	1122228.AQXR01000004_gene1216	sequence-specific DNA binding	NA
UHGV-0179926_23	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0179926_23	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0179926_26	Structural annotation	PF04545, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0179926_30	PHROG	phrog_21525	NA	unknown function
UHGV-0179926_31	PHROG	phrog_21525	NA	unknown function
UHGV-0179926_33	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0179926_33	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0179926_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0179926_33	Pfam	PF11753	NA	DUF3310
UHGV-0179926_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0179926_34	KOfam	K14059	int; integrase	NA
UHGV-0179926_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0179926_34	UniRef90	UniRef90_A0A3G9K7S3	Tyr recombinase domain-containing protein	NA
UHGV-0179926_34	eggNOG-mapper	742742.HMPREF9452_01322	Belongs to the 'phage' integrase family	NA
UHGV-0179926_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179926_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179926_34	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0179926_38	PHROG	phrog_21525	NA	unknown function
UHGV-0179926_39	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0179926_40	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0179926_40	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0179926_40	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-0179926_40	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0179926_40	Pfam	PF00692	dUTPase	dUTPase
UHGV-0179926_40	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0179926_40	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0179926_40	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0179926_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0179926_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0179926_44	UniRef90	UniRef90_A0A3G9JWL1	IstB_IS21 domain-containing protein	NA
UHGV-0179926_44	eggNOG-mapper	502558.EGYY_15420	IstB-like ATP binding protein	NA
UHGV-0179926_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0179926_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0179926_45	eggNOG-mapper	742722.HMPREF9463_00205	NA	NA
UHGV-0179926_49	UniRef90	UniRef90_A0A8E2LFG2	NA	NA
UHGV-0179926_49	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0179926_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0179926_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0179926_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0179926_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0179926_51	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0179926_54	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0179926_54	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0179926_54	UniRef90	UniRef90_UPI001897CA3A	exonuclease	NA
UHGV-0179926_54	eggNOG-mapper	158787.BSCA_1041	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0179926_54	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0179926_54	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0179926_54	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0179926_54	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0179926_54	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0179926_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0179926_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0179926_55	UniRef90	UniRef90_A0A3G9KAD9	Site-specific DNA recombinase	NA
UHGV-0179926_55	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0179926_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0179926_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0179926_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0179926_55	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0179926_57	PHROG	phrog_32635	NA	unknown function
UHGV-0179926_57	UniRef90	UniRef90_A0A374TRJ0	Amidase_5 domain-containing protein	NA
UHGV-0179926_57	eggNOG-mapper	97139.C824_03356	NA	NA
UHGV-0179926_58	PHROG	phrog_1129	holin	lysis
UHGV-0179926_58	UniRef90	UniRef90_A0A810PUU2	Holin	NA
UHGV-0179926_58	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0179926_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0179926_58	Structural annotation	PF06946	NA	NA
UHGV-0179926_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0179926_61	PHROG	phrog_16490	NA	unknown function
UHGV-0179926_61	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0179926_62	PHROG	phrog_21718	NA	unknown function
UHGV-0179926_64	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0179926_64	PHROG	phrog_819	tail protein	tail
UHGV-0179926_64	eggNOG-mapper	1232452.BAIB02000007_gene1609	Collagen triple helix repeat (20 copies)	NA
UHGV-0179926_64	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0179926_64	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0179926_67	PHROG	phrog_13141	NA	unknown function
UHGV-0179926_67	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0179926_69	PHROG	phrog_538	minor tail protein	tail
UHGV-0179926_69	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0179926_69	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0179926_69	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0179926_70	eggNOG-mapper	1111121.HMPREF1247_0852	NA	NA
UHGV-0179926_70	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0179926_71	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0179926_71	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-0179926_71	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-0179926_71	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0179926_71	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0179926_71	COG	COG1340	NA	NA
UHGV-0179926_71	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA