UHGV-0179973

Genome information

Genome length 35,598 bps

CDS count 57

Completeness 90.50% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0179973
vOTU ID	vOTU-077031
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583366
BioSample	SAMN09781724
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.18
Jumbo phage	No

Genome content
Genome length	35,598 bps
GC content	50.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	87.82%
Average CDS length	551.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0179973_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0179973_1	UniRef90	UniRef90_UPI001BD2F061	P27 family phage terminase small subunit	NA
UHGV-0179973_1	eggNOG-mapper	511.JT27_15720	Phage terminase, small subunit	NA
UHGV-0179973_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0179973_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0179973_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179973_2	UniRef90	UniRef90_A0A3A3FS42	HNH endonuclease	NA
UHGV-0179973_2	eggNOG-mapper	380358.XALC_2397	Endonuclease	NA
UHGV-0179973_2	PADLOC	PtuC2_00002	Reverse transcriptase	Septu
UHGV-0179973_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0179973_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0179973_2	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0179973_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0179973_3	UniRef90	UniRef90_A0A0C2BHX2	Terminase	NA
UHGV-0179973_3	eggNOG-mapper	511.JT27_15725	COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0179973_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0179973_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0179973_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0179973_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0179973_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0179973_4	UniRef90	UniRef90_A0A4Y9VT27	Phage portal protein	NA
UHGV-0179973_4	eggNOG-mapper	399739.Pmen_3972	portal protein	NA
UHGV-0179973_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0179973_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0179973_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0179973_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0179973_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0179973_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0179973_5	UniRef90	UniRef90_A0A0Q6WHR6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0179973_5	eggNOG-mapper	1197719.A464_2019	Belongs to the peptidase S14 family	NA
UHGV-0179973_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0179973_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0179973_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0179973_6	UniRef90	UniRef90_UPI001781ED0A	phage major capsid protein	NA
UHGV-0179973_6	eggNOG-mapper	1007105.PT7_P056	Phage capsid family	NA
UHGV-0179973_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0179973_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0179973_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0179973_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0179973_7	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0179973_7	UniRef90	UniRef90_UPI0003B9D6E3	head-tail connector protein	NA
UHGV-0179973_7	eggNOG-mapper	1388763.O165_022245	DNA packaging	NA
UHGV-0179973_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0179973_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0179973_7	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0179973_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0179973_8	UniRef90	UniRef90_A0A845H3X6	Phage head closure protein	NA
UHGV-0179973_8	eggNOG-mapper	1122243.KB903788_gene39	Phage head-tail joining protein	NA
UHGV-0179973_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0179973_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0179973_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0179973_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0179973_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0179973_9	UniRef90	UniRef90_UPI00145DA41D	HK97 gp10 family phage protein	NA
UHGV-0179973_9	eggNOG-mapper	360910.BAV1467	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0179973_10	PHROG	phrog_347	tail terminator	connector
UHGV-0179973_10	UniRef90	UniRef90_A0A8E8LLF0	NA	NA
UHGV-0179973_10	eggNOG-mapper	267608.RSc1688	NA	NA
UHGV-0179973_10	Pfam	PF11367	NA	DUF3168
UHGV-0179973_11	PHROG	phrog_4757	NA	unknown function
UHGV-0179973_11	UniRef90	UniRef90_A0A0A1VFY7	Bacteriophage capsid protein	NA
UHGV-0179973_11	eggNOG-mapper	742821.HMPREF9464_01078	Phage portal protein, lambda family	NA
UHGV-0179973_11	COG	COG5511	Phage capsid protein	NA
UHGV-0179973_13	PHROG	phrog_584	major tail protein	tail
UHGV-0179973_13	UniRef90	UniRef90_A0A261RF19	Phage tail protein	NA
UHGV-0179973_13	eggNOG-mapper	686578.AFFX01000004_gene3952	Phage tail tube protein, TTP	NA
UHGV-0179973_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0179973_13	COG	COG5492	NA	NA
UHGV-0179973_13	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0179973_14	PHROG	phrog_569	tail length tape measure protein	tail
UHGV-0179973_14	UniRef90	UniRef90_H0FAE6	NA	NA
UHGV-0179973_14	eggNOG-mapper	477184.KYC_18240	phage protein Ypo2117 SWALL Q8ZEP3 (EMBL AJ414151) (103 aa) fasta scores E() 2.7e-07, 36.79 id in 106 aa	NA
UHGV-0179973_14	Pfam	PF08748	Phage tail assembly chaperone	Phage_TAC_4
UHGV-0179973_14	Structural annotation	PF08748	NA	NA
UHGV-0179973_15	PHROG	phrog_24	tail length tape measure protein	tail
UHGV-0179973_15	UniRef90	UniRef90_UPI000A29F71C	phage tail length tape measure family protein	NA
UHGV-0179973_15	eggNOG-mapper	360910.BAV1473	tail length tape	NA
UHGV-0179973_15	Pfam	PF06791	Prophage tail length tape measure protein	TMP_2
UHGV-0179973_15	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0179973_15	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0179973_16	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0179973_16	UniRef90	UniRef90_A0A447L667	Alkanesulfonate ABC transporter permease	NA
UHGV-0179973_16	eggNOG-mapper	911008.GLAD_04141	NA	NA
UHGV-0179973_17	PHROG	phrog_396	minor tail protein	tail
UHGV-0179973_17	UniRef90	UniRef90_A0A839HPU5	NA	NA
UHGV-0179973_17	eggNOG-mapper	556269.ACDQ01000003_gene1354	NA	NA
UHGV-0179973_17	Pfam	PF08875	NA	DUF1833
UHGV-0179973_17	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0179973_18	UniRef90	UniRef90_C3X7Y0	NlpC/P60 domain-containing protein	NA
UHGV-0179973_18	eggNOG-mapper	556269.ACDQ01000003_gene1355	to Bacteriophage D3 Orf25 SWALL Q9MC96 (EMBL AF165214) (135 aa) fasta scores E() 0.00047, 30.46 id in 128 aa	NA
UHGV-0179973_18	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0179973_18	Structural annotation	PF05382, TIGR02594, COG0791	NA	NA
UHGV-0179973_19	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0179973_19	UniRef90	UniRef90_C3X7Y1	Phage-tail_3 domain-containing protein	NA
UHGV-0179973_19	eggNOG-mapper	556269.ACDQ01000003_gene1356	cellulase activity	NA
UHGV-0179973_19	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0179973_19	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0179973_19	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0179973_19	Structural annotation	PF13550, PF02597, PF14879, MF_00460, NF040662, NF006231, COG4733, COG2104	NA	NA
UHGV-0179973_20	PHROG	phrog_5795	tail protein	tail
UHGV-0179973_20	UniRef90	UniRef90_C3X7Y2	Phage Tail Collar Domain protein	NA
UHGV-0179973_20	eggNOG-mapper	556269.ACDQ01000003_gene1357	tail collar domain protein	NA
UHGV-0179973_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0179973_20	Structural annotation	COG4675	NA	NA
UHGV-0179973_21	UniRef90	UniRef90_C3X7Y3	NA	NA
UHGV-0179973_21	eggNOG-mapper	665942.HMPREF1022_02677	NA	NA
UHGV-0179973_21	Pfam	PF14301	NA	DUF4376
UHGV-0179973_21	Structural annotation	PF14301	NA	NA
UHGV-0179973_23	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0179973_23	PHROG	phrog_7	endolysin	lysis
UHGV-0179973_23	UniRef90	UniRef90_C3X340	Lysozyme	NA
UHGV-0179973_23	eggNOG-mapper	556268.OFAG_00779	lysozyme	NA
UHGV-0179973_23	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0179973_23	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0179973_23	HAMAP	MF_04110	Endolysin	NA
UHGV-0179973_23	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0179973_25	UniRef90	UniRef90_A0A257CYR3	Oxidoreductase	NA
UHGV-0179973_25	eggNOG-mapper	1437882.AZRU01000091_gene4864	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0179973_25	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0179973_25	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0179973_27	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0179973_27	PHROG	phrog_2466	Rz-like spanin	lysis
UHGV-0179973_27	UniRef90	UniRef90_A0A7W8YMP5	Tfp pilus assembly protein PilN	NA
UHGV-0179973_27	eggNOG-mapper	556268.OFAG_00348	Bacteriophage Rz lysis protein	NA
UHGV-0179973_27	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0179973_27	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0179973_33	PHROG	phrog_6160	NA	unknown function
UHGV-0179973_33	eggNOG-mapper	411464.DESPIG_00769	NA	NA
UHGV-0179973_35	KOfam	K14059	int; integrase	NA
UHGV-0179973_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0179973_35	UniRef90	UniRef90_A0A1Z4VQZ4	Integrase	NA
UHGV-0179973_35	eggNOG-mapper	292415.Tbd_0943	Arm DNA-binding domain	NA
UHGV-0179973_35	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0179973_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0179973_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0179973_35	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0179973_36	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0179973_36	PHROG	phrog_2790	excisionase and transcriptional regulator	integration and excision
UHGV-0179973_36	UniRef90	UniRef90_A0A5S3RL57	Transcriptional regulator	NA
UHGV-0179973_36	eggNOG-mapper	1492922.GY26_02475	Prophage CP4-57 regulatory protein (AlpA)	NA
UHGV-0179973_36	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0179973_36	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0179973_36	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0179973_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0179973_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0179973_37	UniRef90	UniRef90_T5LPF9	Single-stranded DNA-binding protein	NA
UHGV-0179973_37	eggNOG-mapper	556268.OFAG_02331	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0179973_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0179973_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0179973_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0179973_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0179973_37	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0179973_41	PHROG	phrog_6628	NA	unknown function
UHGV-0179973_41	eggNOG-mapper	93220.LV28_24570	NA	NA
UHGV-0179973_45	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0179973_45	UniRef90	UniRef90_W2E9B7	Phage N-6-adenine methyltransferase	NA
UHGV-0179973_45	eggNOG-mapper	1589751.A0A0C5AN16_9CAUD	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0179973_45	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0179973_45	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0179973_45	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0179973_46	PHROG	phrog_874	NA	unknown function
UHGV-0179973_46	UniRef90	UniRef90_UPI0014955A8E	morphogenetic protein	NA
UHGV-0179973_46	eggNOG-mapper	1229485.AMYV01000187_gene3444	NA	NA
UHGV-0179973_46	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0179973_48	PHROG	phrog_7964	NA	unknown function
UHGV-0179973_48	UniRef90	UniRef90_UPI001250AC7C	polymer-forming cytoskeletal protein	NA
UHGV-0179973_48	eggNOG-mapper	556269.ACDQ01000002_gene1162	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0179973_48	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0179973_48	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0179973_48	Structural annotation	NF040481	NA	NA
UHGV-0179973_49	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0179973_49	UniRef90	UniRef90_UPI0015737739	siphovirus Gp157 family protein	NA
UHGV-0179973_49	eggNOG-mapper	358220.C380_10795	Siphovirus Gp157	NA
UHGV-0179973_49	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0179973_49	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0179973_50	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179973_50	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0179973_50	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0179973_53	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0179973_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0179973_53	UniRef90	UniRef90_A0A366HCM2	Phage repressor protein	NA
UHGV-0179973_53	eggNOG-mapper	1111732.AZOD01000012_gene1282	Peptidase S24-like	NA
UHGV-0179973_53	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0179973_53	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0179973_53	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0179973_54	PHROG	phrog_419	NA	unknown function
UHGV-0179973_54	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0179973_54	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0179973_55	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0179973_55	UniRef90	UniRef90_UPI00136CC1C2	NA	NA
UHGV-0179973_55	eggNOG-mapper	556269.ACDQ01000002_gene1166	NA	NA
UHGV-0179973_55	Pfam	PF07105	NA	DUF1367
UHGV-0179973_55	Structural annotation	PF07105	NA	NA
UHGV-0179973_56	PHROG	phrog_131	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0179973_56	UniRef90	UniRef90_UPI00055D3C7E	NA	NA
UHGV-0179973_56	eggNOG-mapper	556269.ACDQ01000002_gene1167	NA	NA
UHGV-0179973_56	Structural annotation	PF07102	NA	NA
UHGV-0179973_57	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0179973_57	UniRef90	UniRef90_UPI000B24269D	helix-turn-helix domain-containing protein	NA
UHGV-0179973_57	eggNOG-mapper	292414.TM1040_0794	DNA-binding transcription factor activity	NA
UHGV-0179973_57	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0179973_57	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA