UHGV-0180074

Genome information

Genome length 41,243 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180074
vOTU ID	vOTU-046694
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_574509
BioSample	SAMN07449012
Country	India
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.73
Jumbo phage	No

Genome content
Genome length	41,243 bps
GC content	37.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.10%
Average CDS length	612.91 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180074_7	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA
UHGV-0180074_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180074_12	PHROG	phrog_10250	NA	unknown function
UHGV-0180074_12	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0180074_12	eggNOG-mapper	1120972.AUMH01000011_gene130	Phage terminase, large subunit	NA
UHGV-0180074_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180074_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180074_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180074_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180074_13	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0180074_13	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0180074_13	eggNOG-mapper	1121866.AUGK01000006_gene893	NA	NA
UHGV-0180074_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0180074_13	Structural annotation	PF10651	NA	NA
UHGV-0180074_14	UniRef90	UniRef90_R6J123	ATP synthase B chain	NA
UHGV-0180074_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180074_15	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0180074_15	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180074_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180074_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180074_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180074_16	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0180074_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180074_16	Structural annotation	PF06810	NA	NA
UHGV-0180074_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0180074_17	UniRef90	UniRef90_A0A3P6K1X9	Lj928 prophage protein	NA
UHGV-0180074_17	eggNOG-mapper	1151292.QEW_0416	NA	NA
UHGV-0180074_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0180074_19	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0180074_19	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0180074_19	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0180074_19	Structural annotation	PF20557	NA	NA
UHGV-0180074_20	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0180074_21	UniRef90	UniRef90_A0A8D9PDS5	Minor capsid protein	NA
UHGV-0180074_21	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0180074_22	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0180074_22	Structural annotation	PF12691	NA	NA
UHGV-0180074_23	PHROG	phrog_1407	major tail protein	tail
UHGV-0180074_23	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0180074_23	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-0180074_23	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0180074_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180074_24	Structural annotation	PF11836	NA	NA
UHGV-0180074_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180074_26	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0180074_26	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0180074_26	Structural annotation	PF09325	NA	NA
UHGV-0180074_27	PHROG	phrog_1194	NA	unknown function
UHGV-0180074_27	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0180074_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180074_28	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-0180074_30	PHROG	phrog_3639	minor tail protein	tail
UHGV-0180074_30	eggNOG-mapper	536233.CLO_1435	nuclear chromosome segregation	NA
UHGV-0180074_30	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0180074_31	PHROG	phrog_297	holin	lysis
UHGV-0180074_31	UniRef90	UniRef90_R5KJ92	CHAP domain./Lectin C-type domain	NA
UHGV-0180074_31	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0180074_31	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0180074_31	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180074_31	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0180074_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180074_31	Structural annotation	PF04531, COG5546, COG3942	NA	NA
UHGV-0180074_32	PHROG	phrog_1863	NA	unknown function
UHGV-0180074_33	UniRef90	UniRef90_A0A8D9PDZ2	Insulin receptor	NA
UHGV-0180074_34	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0180074_35	PHROG	phrog_21718	NA	unknown function
UHGV-0180074_35	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0180074_35	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0180074_36	PHROG	phrog_16490	NA	unknown function
UHGV-0180074_36	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0180074_39	UniRef90	UniRef90_A0A7C6W8B1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0180074_40	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0180074_40	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180074_40	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-0180074_40	eggNOG-mapper	926549.KI421517_gene3336	SNF2 family N-terminal domain	NA
UHGV-0180074_40	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0180074_40	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0180074_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0180074_40	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0180074_40	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0180074_41	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0180074_41	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180074_41	UniRef90	UniRef90_A0A8D9PDS0	DNA polymerase	NA
UHGV-0180074_41	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0180074_41	PADLOC	drt-cluster58	DRT	DRT
UHGV-0180074_41	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0180074_41	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0180074_41	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0180074_41	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-0180074_42	UniRef90	UniRef90_A0A8D9UH23	Queuine tRNA-ribosyltransferase	NA
UHGV-0180074_42	eggNOG-mapper	47716.JOFH01000038_gene1963	NA	NA
UHGV-0180074_42	Structural annotation	PF01702, MF_01634, TIGR00432, COG0343	NA	NA
UHGV-0180074_43	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0180074_44	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0180074_44	UniRef90	UniRef90_A0A521GWZ6	MazG domain-containing protein	NA
UHGV-0180074_44	eggNOG-mapper	56110.Oscil6304_1062	PFAM MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0180074_44	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0180074_44	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0180074_44	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0180074_45	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0180074_45	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0180074_45	UniRef90	UniRef90_R7N4B8	GTP cyclohydrolase 1	NA
UHGV-0180074_45	eggNOG-mapper	1410650.JHWL01000004_gene1862	GTP cyclohydrolase I	NA
UHGV-0180074_45	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0180074_45	NCBIFam	NF006826.0	GTP cyclohydrolase I FolE	NA
UHGV-0180074_45	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0180074_45	HAMAP	MF_00223	GTP cyclohydrolase 1 [folE]	NA
UHGV-0180074_45	Structural annotation	PF01227, MF_00223, NF006826, COG0302	NA	NA
UHGV-0180074_46	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0180074_46	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0180074_46	UniRef90	UniRef90_A0A6A8M775	7-carboxy-7-deazaguanine synthase	NA
UHGV-0180074_46	eggNOG-mapper	351627.Csac_0105	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0180074_46	PADLOC	pVip-near-kinase	Viperins associated with kinases	Viperin
UHGV-0180074_46	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0180074_46	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0180074_46	HAMAP	MF_00917	7-carboxy-7-deazaguanine synthase [queE]	NA
UHGV-0180074_46	Structural annotation	MF_00917, TIGR03963, COG0602	NA	NA
UHGV-0180074_47	KOfam	K01737	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	NA
UHGV-0180074_47	PHROG	phrog_2389	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0180074_47	UniRef90	UniRef90_A0A269TG86	6-carboxy-5,6,7,8-tetrahydropterin synthase	NA
UHGV-0180074_47	eggNOG-mapper	1273103.NM10_05321	synthase	NA
UHGV-0180074_47	Pfam	PF01242	6-pyruvoyl tetrahydropterin synthase	PTPS
UHGV-0180074_47	NCBIFam	TIGR03367.1	6-carboxytetrahydropterin synthase QueD	NA
UHGV-0180074_47	COG	COG0720	6-pyruvoyl-tetrahydropterin synthase	NA
UHGV-0180074_47	Structural annotation	PF01242, TIGR00039, COG0720	NA	NA
UHGV-0180074_48	KOfam	K06920	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	NA
UHGV-0180074_48	PHROG	phrog_1550	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0180074_48	UniRef90	UniRef90_A0A8B2E116	7-cyano-7-deazaguanine synthase	NA
UHGV-0180074_48	eggNOG-mapper	888062.HMPREF9083_0495	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	NA
UHGV-0180074_48	PADLOC	QueC_00001	QueC	CBASS
UHGV-0180074_48	Pfam	PF06508	Queuosine biosynthesis protein QueC	QueC
UHGV-0180074_48	NCBIFam	TIGR00364.1	7-cyano-7-deazaguanine synthase QueC	NA
UHGV-0180074_48	COG	COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	NA
UHGV-0180074_48	HAMAP	MF_01633	7-cyano-7-deazaguanine synthase [queC]	NA
UHGV-0180074_48	Structural annotation	PF06508, MF_01633, TIGR00364, COG0603	NA	NA
UHGV-0180074_49	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-0180074_49	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0180074_50	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0180074_50	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0180074_50	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0180074_50	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0180074_50	PADLOC	drt-cluster192	DRT	DRT
UHGV-0180074_50	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0180074_50	Pfam	PF01751	Toprim domain	Toprim
UHGV-0180074_50	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0180074_50	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0180074_50	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0180074_51	PHROG	phrog_3724	NA	unknown function
UHGV-0180074_51	Pfam	PF05037	NA	DUF669
UHGV-0180074_51	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0180074_52	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180074_52	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0180074_52	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0180074_52	Pfam	PF13479	AAA domain	AAA_24
UHGV-0180074_52	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0180074_52	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0180074_54	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180074_54	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0180074_54	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0180074_55	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0180074_60	PHROG	phrog_10714	NA	unknown function