UHGV-0180090

Genome information

Genome length 29,734 bps

CDS count 51

Completeness 73.43% (medium-quality)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180090
vOTU ID	vOTU-029124
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_581763
BioSample	SAMN09781749
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.75
Jumbo phage	No

Genome content
Genome length	29,734 bps
GC content	53.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.77%
Average CDS length	538.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180090_1	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0180090_1	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0180090_1	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0180090_1	Structural annotation	PF13542	NA	NA
UHGV-0180090_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180090_2	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0180090_2	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0180090_2	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0180090_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180090_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180090_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180090_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180090_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180090_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180090_3	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0180090_3	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0180090_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180090_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180090_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180090_4	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0180090_4	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0180090_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180090_4	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0180090_4	COG	COG2369	NA	NA
UHGV-0180090_4	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0180090_5	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0180090_6	PHROG	phrog_3675	NA	unknown function
UHGV-0180090_6	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0180090_6	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0180090_6	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0180090_6	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0180090_7	Structural annotation	PF18152	NA	NA
UHGV-0180090_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180090_8	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0180090_8	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0180090_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180090_8	Structural annotation	PF06810	NA	NA
UHGV-0180090_9	PHROG	phrog_212	major head protein	head and packaging
UHGV-0180090_9	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0180090_9	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0180090_9	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0180090_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180090_10	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0180090_11	PHROG	phrog_3366	NA	unknown function
UHGV-0180090_11	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0180090_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0180090_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180090_12	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0180090_12	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0180090_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180090_12	Structural annotation	PF11114	NA	NA
UHGV-0180090_13	PHROG	phrog_3266	tail completion	connector
UHGV-0180090_13	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0180090_13	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0180090_13	Structural annotation	PF12691	NA	NA
UHGV-0180090_14	PHROG	phrog_3099	NA	unknown function
UHGV-0180090_14	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0180090_14	Structural annotation	TIGR02126	NA	NA
UHGV-0180090_15	PHROG	phrog_11299	NA	unknown function
UHGV-0180090_15	eggNOG-mapper	1235797.C816_04185	NA	NA
UHGV-0180090_15	Structural annotation	PF10666	NA	NA
UHGV-0180090_16	PHROG	phrog_706	NA	unknown function
UHGV-0180090_16	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0180090_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0180090_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180090_16	Structural annotation	PF06854	NA	NA
UHGV-0180090_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180090_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0180090_17	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0180090_17	COG	COG1511	NA	NA
UHGV-0180090_17	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0180090_18	PHROG	phrog_1194	NA	unknown function
UHGV-0180090_18	eggNOG-mapper	693746.OBV_18200	NA	NA
UHGV-0180090_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0180090_19	PHROG	phrog_13879	NA	unknown function
UHGV-0180090_19	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0180090_19	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0180090_20	PHROG	phrog_18725	NA	unknown function
UHGV-0180090_20	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0180090_21	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0180090_21	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0180090_23	PHROG	phrog_2310	NA	unknown function
UHGV-0180090_24	KOfam	K17734	aprX; serine protease AprX [EC:3.4.21.-]	NA
UHGV-0180090_24	UniRef90	UniRef90_UPI000F6408F2	S-layer homology domain-containing protein	NA
UHGV-0180090_24	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0180090_24	Structural annotation	PF00395, TIGR03921, COG1404	NA	NA
UHGV-0180090_25	PHROG	phrog_1863	NA	unknown function
UHGV-0180090_25	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0180090_26	PHROG	phrog_1129	holin	lysis
UHGV-0180090_26	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0180090_26	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180090_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180090_26	Structural annotation	PF16079	NA	NA
UHGV-0180090_27	UniRef90	UniRef90_R6RLN4	Peptidase_C39_2 domain-containing protein	NA
UHGV-0180090_27	eggNOG-mapper	742740.HMPREF9474_03763	NA	NA
UHGV-0180090_27	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0180090_27	Structural annotation	PF03412, COG4990	NA	NA
UHGV-0180090_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0180090_29	PHROG	phrog_21718	NA	unknown function
UHGV-0180090_29	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0180090_30	PHROG	phrog_16490	NA	unknown function
UHGV-0180090_30	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0180090_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180090_32	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0180090_33	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0180090_34	PHROG	phrog_18108	NA	unknown function
UHGV-0180090_34	UniRef90	UniRef90_UPI0004BFFB0D	helix-turn-helix domain-containing protein	NA
UHGV-0180090_34	eggNOG-mapper	457405.FSDG_00799	NA	NA
UHGV-0180090_34	AcrCatalog	cluster_115962	NA	NA
UHGV-0180090_34	Structural annotation	PF07443	NA	NA
UHGV-0180090_35	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0180090_35	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0180090_35	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0180090_36	KOfam	K14059	int; integrase	NA
UHGV-0180090_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0180090_36	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0180090_36	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0180090_36	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0180090_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180090_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180090_36	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0180090_39	eggNOG-mapper	476272.RUMHYD_03309	NA	NA
UHGV-0180090_39	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0180090_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180090_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180090_41	UniRef90	UniRef90_F3ZVU8	Helix-turn-helix domain protein	NA
UHGV-0180090_41	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0180090_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180090_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180090_41	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180090_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180090_42	UniRef90	UniRef90_A0A841Z2H5	Helix-turn-helix transcriptional regulator	NA
UHGV-0180090_42	eggNOG-mapper	169963.lmo2328	Helix-turn-helix domain	NA
UHGV-0180090_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180090_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180090_42	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180090_46	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0180090_46	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0180090_46	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0180090_47	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0180090_47	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0180090_47	Structural annotation	TIGR03070	NA	NA