UHGV-0180098

Genome information

Genome length 30,050 bps

CDS count 41

Completeness 73.88% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180098
vOTU ID	vOTU-029126
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580757
BioSample	SAMN09781734
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.07
Jumbo phage	No

Genome content
Genome length	30,050 bps
GC content	52.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.86%
Average CDS length	677.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180098_2	PHROG	phrog_13845	NA	unknown function
UHGV-0180098_2	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0180098_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0180098_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180098_3	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0180098_3	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0180098_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180098_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180098_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180098_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180098_4	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0180098_4	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0180098_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180098_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0180098_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180098_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180098_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0180098_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0180098_5	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-0180098_5	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0180098_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0180098_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0180098_5	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0180098_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180098_6	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0180098_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0180098_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180098_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0180098_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180098_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180098_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180098_7	PHROG	phrog_749	NA	unknown function
UHGV-0180098_7	UniRef90	UniRef90_A0A371IJS1	Phage gp6-like head-tail connector protein	NA
UHGV-0180098_7	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0180098_8	PHROG	phrog_19734	NA	unknown function
UHGV-0180098_8	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0180098_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0180098_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180098_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0180098_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0180098_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180098_10	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0180098_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0180098_10	Structural annotation	TIGR01725	NA	NA
UHGV-0180098_11	PHROG	phrog_88	major tail protein	tail
UHGV-0180098_11	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0180098_11	eggNOG-mapper	508419.F8J168_9CAUD	NA	NA
UHGV-0180098_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180098_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0180098_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0180098_14	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0180098_14	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0180098_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180098_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180098_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180098_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0180098_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180098_15	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0180098_15	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0180098_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0180098_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180098_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180098_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180098_16	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0180098_16	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0180098_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180098_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180098_16	COG	COG4926	Phage-related protein	NA
UHGV-0180098_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180098_18	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0180098_18	eggNOG-mapper	565653.EGBG_01980	Phage minor structural protein	NA
UHGV-0180098_18	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0180098_18	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0180098_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0180098_19	PHROG	phrog_291	endolysin	lysis
UHGV-0180098_19	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0180098_19	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0180098_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180098_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180098_19	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0180098_21	PHROG	phrog_15303	NA	unknown function
UHGV-0180098_23	UniRef90	UniRef90_A0A7X2P872	Ribbon-helix-helix protein, CopG family	NA
UHGV-0180098_23	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0180098_23	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0180098_23	Structural annotation	PF16734, PF01402	NA	NA
UHGV-0180098_24	AcrCatalog	cluster_11486	NA	NA
UHGV-0180098_25	PHROG	phrog_21718	NA	unknown function
UHGV-0180098_28	PHROG	phrog_16490	NA	unknown function
UHGV-0180098_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180098_29	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0180098_30	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0180098_31	KOfam	K14059	int; integrase	NA
UHGV-0180098_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0180098_31	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0180098_31	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0180098_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180098_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180098_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180098_32	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180098_32	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0180098_32	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0180098_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180098_32	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180098_32	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180098_35	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0180098_35	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0180098_35	UniRef90	UniRef90_UPI001EE95DBE	3'-5' exoribonuclease	NA
UHGV-0180098_35	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0180098_35	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0180098_35	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0180098_35	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0180098_35	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0180098_35	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0180098_36	Structural annotation	PF06776, COG5342	NA	NA
UHGV-0180098_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180098_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180098_37	UniRef90	UniRef90_A0A3D4L0P7	HTH cro/C1-type domain-containing protein	NA
UHGV-0180098_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180098_37	COG	COG3780	DNA endonuclease related to intein-encoded endonucleases	NA
UHGV-0180098_37	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0180098_38	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA