UHGV-0180105

Genome information

Genome length 28,895 bps

CDS count 46

Completeness 75.55% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180105
vOTU ID	vOTU-029127
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590148
BioSample	SAMN09781769
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.14
Jumbo phage	No

Genome content
Genome length	28,895 bps
GC content	59.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.27%
Average CDS length	569.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180105_2	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0180105_2	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0180105_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0180105_2	Structural annotation	PF14205	NA	NA
UHGV-0180105_3	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180105_3	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0180105_3	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0180105_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180105_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0180105_3	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0180105_4	PHROG	phrog_20533	NA	unknown function
UHGV-0180105_4	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-0180105_4	eggNOG-mapper	307480.IW16_06120	NA	NA
UHGV-0180105_4	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0180105_5	KOfam	K24451	zim; modification methylase	NA
UHGV-0180105_5	PHROG	phrog_12517	NA	unknown function
UHGV-0180105_5	UniRef90	UniRef90_UPI00195BA2D4	ParB N-terminal domain-containing protein	NA
UHGV-0180105_5	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0180105_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0180105_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180105_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180105_5	COG	COG0863	DNA modification methylase	NA
UHGV-0180105_5	Structural annotation	PF02195, PF01170, MF_02015, MF_01872, TIGR01177, TIGR04285, COG1041, COG5119	NA	NA
UHGV-0180105_6	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0180105_6	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0180105_6	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0180105_6	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0180105_6	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0180105_6	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0180105_6	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0180105_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180105_7	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0180105_7	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0180105_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180105_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180105_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180105_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0180105_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180105_9	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0180105_9	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0180105_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180105_9	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0180105_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180105_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180105_10	PHROG	phrog_16951	NA	unknown function
UHGV-0180105_10	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0180105_10	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0180105_10	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0180105_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180105_11	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0180105_11	eggNOG-mapper	1236976.JCM16418_795	Phage capsid family	NA
UHGV-0180105_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180105_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180105_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180105_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180105_12	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0180105_12	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0180105_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0180105_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0180105_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0180105_13	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0180105_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0180105_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0180105_13	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0180105_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180105_14	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0180105_14	Structural annotation	PF05657	NA	NA
UHGV-0180105_15	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0180105_15	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0180105_15	Structural annotation	TIGR01725	NA	NA
UHGV-0180105_16	PHROG	phrog_88	major tail protein	tail
UHGV-0180105_16	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0180105_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0180105_18	PHROG	phrog_23464	NA	unknown function
UHGV-0180105_18	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-0180105_18	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0180105_18	COG	COG5412	Phage-related protein	NA
UHGV-0180105_18	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0180105_20	PHROG	phrog_32744	NA	unknown function
UHGV-0180105_20	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0180105_20	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0180105_22	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0180105_23	PHROG	phrog_31538	NA	unknown function
UHGV-0180105_23	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0180105_24	PHROG	phrog_13589	NA	unknown function
UHGV-0180105_24	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0180105_25	PHROG	phrog_37900	NA	unknown function
UHGV-0180105_25	UniRef90	UniRef90_UPI001897C7B4	NA	NA
UHGV-0180105_25	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0180105_25	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0180105_25	Pfam	PF19789	NA	DUF6273
UHGV-0180105_25	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0180105_25	Structural annotation	PF19789, PF14686	NA	NA
UHGV-0180105_26	PHROG	phrog_1863	NA	unknown function
UHGV-0180105_26	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0180105_27	PHROG	phrog_13256	NA	unknown function
UHGV-0180105_27	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0180105_29	PHROG	phrog_18955	NA	unknown function
UHGV-0180105_29	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0180105_29	eggNOG-mapper	696369.KI912183_gene2044	exopolysaccharide biosynthesis protein	NA
UHGV-0180105_29	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0180105_29	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0180105_29	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0180105_30	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0180105_30	PHROG	phrog_894	endolysin	lysis
UHGV-0180105_30	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0180105_30	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0180105_30	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0180105_30	COG	COG3108	NA	NA
UHGV-0180105_30	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0180105_31	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0180105_32	UniRef90	UniRef90_R6DRH1	Putative TnpX site-specific recombinase	NA
UHGV-0180105_32	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0180105_32	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0180105_33	PHROG	phrog_25567	NA	unknown function
UHGV-0180105_33	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0180105_33	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0180105_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180105_33	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0180105_37	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180105_39	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0180105_40	KOfam	K14059	int; integrase	NA
UHGV-0180105_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0180105_40	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0180105_40	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0180105_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180105_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180105_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180105_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180105_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0180105_41	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0180105_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180105_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180105_44	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0180105_44	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0180105_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180105_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180105_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180105_45	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0180105_46	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0180105_46	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0180105_46	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180105_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0180105_46	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0180105_46	Structural annotation	PF01381, NF040522, COG1476	NA	NA