UHGV-0180119

Genome information

Genome length 46,005 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180119
vOTU ID	vOTU-002642
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582531
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.64
Jumbo phage	No

Genome content
Genome length	46,005 bps
GC content	58.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.72%
Average CDS length	765.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180119_1	PHROG	phrog_22978	NA	unknown function
UHGV-0180119_1	UniRef90	UniRef90_A0A416JVP5	PBECR5 domain-containing protein	NA
UHGV-0180119_1	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0180119_1	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0180119_2	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0180119_3	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0180119_3	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0180119_4	PHROG	phrog_28526	NA	unknown function
UHGV-0180119_4	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0180119_4	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0180119_4	Pfam	PF04255	NA	DUF433
UHGV-0180119_6	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0180119_6	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0180119_6	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0180119_6	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0180119_6	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0180119_7	PHROG	phrog_1330	tail protein	tail
UHGV-0180119_7	eggNOG-mapper	306323.Q56S86_9CAUD	peptidoglycan catabolic process	NA
UHGV-0180119_7	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0180119_8	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0180119_8	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0180119_8	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0180119_9	PHROG	phrog_12105	NA	unknown function
UHGV-0180119_9	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0180119_10	PHROG	phrog_15239	NA	unknown function
UHGV-0180119_11	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0180119_11	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0180119_11	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0180119_11	Pfam	PF13252	NA	DUF4043
UHGV-0180119_11	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0180119_11	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180119_12	PHROG	phrog_13908	NA	unknown function
UHGV-0180119_12	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0180119_13	KOfam	K07584	NA	NA
UHGV-0180119_13	PHROG	phrog_4478	peptidase	other
UHGV-0180119_13	UniRef90	UniRef90_UPI00085C9208	ribosomal-processing cysteine protease Prp	NA
UHGV-0180119_13	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0180119_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0180119_13	COG	COG2868	NA	NA
UHGV-0180119_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0180119_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180119_14	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0180119_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0180119_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180119_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0180119_15	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0180119_15	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0180119_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180119_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180119_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180119_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180119_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180119_18	UniRef90	UniRef90_A0A2V2FT63	HTH cro/C1-type domain-containing protein	NA
UHGV-0180119_18	eggNOG-mapper	1366050.N234_16247	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180119_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180119_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180119_18	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180119_23	KOfam	K14059	int; integrase	NA
UHGV-0180119_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0180119_23	UniRef90	UniRef90_UPI001AA1BF73	tyrosine-type recombinase/integrase	NA
UHGV-0180119_23	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-0180119_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180119_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180119_23	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0180119_25	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0180119_25	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0180119_25	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0180119_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180119_28	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0180119_28	UniRef90	UniRef90_A0A3R6NRE7	XRE family transcriptional regulator	NA
UHGV-0180119_28	eggNOG-mapper	1235802.C823_01933	Helix-turn-helix domain	NA
UHGV-0180119_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180119_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180119_28	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0180119_31	Pfam	PF05339	NA	DUF739
UHGV-0180119_31	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0180119_31	Structural annotation	PF05339, TIGR00673, COG1476	NA	NA
UHGV-0180119_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180119_35	UniRef90	UniRef90_A0A3E4TNU7	Endonuclease	NA
UHGV-0180119_35	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0180119_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0180119_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0180119_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0180119_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0180119_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0180119_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180119_36	UniRef90	UniRef90_UPI00098877A9	recombination protein RecT	NA
UHGV-0180119_36	eggNOG-mapper	1352230.S6AVW6_9CAUD	DNA metabolic process	NA
UHGV-0180119_36	Pfam	PF03837	RecT family	RecT
UHGV-0180119_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0180119_36	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0180119_37	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0180119_38	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0180119_38	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180119_38	UniRef90	UniRef90_UPI0009317C7B	NA	NA
UHGV-0180119_38	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0180119_38	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0180119_38	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0180119_38	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0180119_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180119_38	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0180119_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180119_40	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180119_40	UniRef90	UniRef90_UPI001C1103D0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180119_40	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0180119_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0180119_40	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0180119_47	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180119_47	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180119_47	UniRef90	UniRef90_A0A316S792	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180119_47	eggNOG-mapper	1235790.C805_00858	C-5 cytosine-specific DNA methylase	NA
UHGV-0180119_47	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0180119_47	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180119_47	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180119_47	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180119_47	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0180119_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180119_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180119_51	UniRef90	UniRef90_A0A1V5KEV3	Single-stranded DNA-binding protein	NA
UHGV-0180119_51	eggNOG-mapper	1321781.HMPREF1985_01487	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180119_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180119_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180119_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180119_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180119_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180119_52	Structural annotation	PF18892	NA	NA
UHGV-0180119_53	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0180119_53	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0180119_53	Structural annotation	PF11998	NA	NA
UHGV-0180119_55	PHROG	phrog_6918	holin	lysis
UHGV-0180119_55	UniRef90	UniRef90_A0A1C6IFT5	Phage holin, LL-H family	NA
UHGV-0180119_55	eggNOG-mapper	1226322.HMPREF1545_03575	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0180119_55	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0180119_55	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0180119_56	PHROG	phrog_937	hemolysin	other
UHGV-0180119_57	PHROG	phrog_14030	NA	unknown function
UHGV-0180119_57	UniRef90	UniRef90_UPI001D0A0AA0	peptidoglycan-binding protein	NA
UHGV-0180119_57	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0180119_57	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180119_57	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0180119_57	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA