UHGV-0180121

Genome information

Genome length 36,622 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180121
vOTU ID	vOTU-046698
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582535
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.37
Jumbo phage	No

Genome content
Genome length	36,622 bps
GC content	56.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.74%
Average CDS length	546.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180121_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0180121_2	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0180121_2	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0180121_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180121_2	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0180121_3	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180121_3	UniRef90	UniRef90_UPI001F1BE169	Holliday junction endonuclease	NA
UHGV-0180121_3	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0180121_3	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0180121_3	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0180121_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180121_4	UniRef90	UniRef90_UPI0006D56AE3	AP2 domain-containing protein	NA
UHGV-0180121_4	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0180121_4	Structural annotation	PF17375	NA	NA
UHGV-0180121_6	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180121_6	UniRef90	UniRef90_UPI001D09006D	Lar family restriction alleviation protein	NA
UHGV-0180121_6	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0180121_6	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0180121_6	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0180121_6	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0180121_7	Pfam	PF04448	NA	DUF551
UHGV-0180121_7	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0180121_8	PHROG	phrog_22543	NA	unknown function
UHGV-0180121_20	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0180121_20	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0180121_22	PHROG	phrog_881	holin	lysis
UHGV-0180121_22	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0180121_22	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0180121_22	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0180121_22	Structural annotation	PF16938	NA	NA
UHGV-0180121_23	PHROG	phrog_37604	NA	unknown function
UHGV-0180121_23	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0180121_24	PHROG	phrog_22978	NA	unknown function
UHGV-0180121_24	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-0180121_24	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0180121_24	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0180121_25	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0180121_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0180121_26	PHROG	phrog_291	endolysin	lysis
UHGV-0180121_26	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0180121_26	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0180121_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180121_26	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0180121_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180121_26	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0180121_28	PHROG	phrog_892	tail fiber protein	tail
UHGV-0180121_29	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0180121_29	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0180121_29	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0180121_30	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0180121_30	Structural annotation	PF11650	NA	NA
UHGV-0180121_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0180121_31	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0180121_31	eggNOG-mapper	755731.Clo1100_2434	NA	NA
UHGV-0180121_31	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0180121_31	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180121_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180121_33	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0180121_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180121_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180121_35	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0180121_35	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0180121_35	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0180121_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180121_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180121_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180121_39	Structural annotation	NF040976	NA	NA
UHGV-0180121_40	PHROG	phrog_15863	NA	unknown function
UHGV-0180121_40	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0180121_40	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0180121_40	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0180121_42	Structural annotation	PF17917	NA	NA
UHGV-0180121_43	KOfam	K14059	int; integrase	NA
UHGV-0180121_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0180121_43	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0180121_43	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0180121_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180121_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180121_43	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0180121_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180121_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180121_46	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-0180121_46	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0180121_46	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0180121_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180121_46	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180121_51	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0180121_51	eggNOG-mapper	172667.Q7Y3V1_9CAUD	NA	NA
UHGV-0180121_51	Pfam	PF14359	NA	DUF4406
UHGV-0180121_51	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0180121_55	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180121_55	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0180121_55	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0180121_55	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0180121_56	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0180121_56	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180121_56	Structural annotation	PF05772	NA	NA
UHGV-0180121_57	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180121_57	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0180121_57	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0180121_57	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180121_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180121_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180121_58	UniRef90	UniRef90_A0A1W1YRF9	Single-stranded DNA-binding protein	NA
UHGV-0180121_58	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0180121_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180121_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180121_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180121_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180121_58	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180121_59	PHROG	phrog_15768	NA	unknown function
UHGV-0180121_59	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0180121_59	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0180121_59	AcrCatalog	cluster_38323	NA	NA
UHGV-0180121_59	Pfam	PF19808	NA	DUF6291
UHGV-0180121_59	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180121_59	Structural annotation	PF19808	NA	NA
UHGV-0180121_60	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180121_60	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180121_60	UniRef90	UniRef90_A0A3A9ED12	ATP-binding protein	NA
UHGV-0180121_60	eggNOG-mapper	1121333.JMLH01000056_gene1758	IstB-like ATP binding protein	NA
UHGV-0180121_60	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0180121_60	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0180121_60	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0180121_61	PHROG	phrog_18306	NA	unknown function
UHGV-0180121_61	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA