UHGV-0180127

Genome information

Genome length 39,766 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9707

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180127
vOTU ID	vOTU-007926
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_559739
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9707
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.6
Jumbo phage	No

Genome content
Genome length	39,766 bps
GC content	40.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	86.44%
Average CDS length	641.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180127_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180127_1	PHROG	phrog_435	endolysin	lysis
UHGV-0180127_1	UniRef90	UniRef90_A0A1C6J814	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180127_1	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0180127_1	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0180127_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0180127_1	Pfam	PF05036	SPOR domain	SPOR
UHGV-0180127_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180127_2	PHROG	phrog_1129	holin	lysis
UHGV-0180127_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0180127_2	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180127_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180127_2	Structural annotation	PF16079	NA	NA
UHGV-0180127_3	PHROG	phrog_4105	NA	unknown function
UHGV-0180127_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0180127_4	PHROG	phrog_9886	NA	unknown function
UHGV-0180127_4	UniRef90	UniRef90_A0A6L8XQA2	Peptidase S74 domain-containing protein	NA
UHGV-0180127_4	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-0180127_4	COG	COG4926	Phage-related protein	NA
UHGV-0180127_4	Structural annotation	PF03944	NA	NA
UHGV-0180127_5	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0180127_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0180127_5	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0180127_5	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0180127_5	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0180127_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180127_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180127_5	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0180127_7	UniRef90	UniRef90_UPI001EE002C0	pyocin knob domain-containing protein	NA
UHGV-0180127_7	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0180127_7	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0180127_8	PHROG	phrog_16267	NA	unknown function
UHGV-0180127_8	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0180127_8	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0180127_8	COG	COG4926	Phage-related protein	NA
UHGV-0180127_8	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0180127_9	PHROG	phrog_1401	NA	unknown function
UHGV-0180127_9	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-0180127_9	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0180127_9	Structural annotation	PF07761	NA	NA
UHGV-0180127_10	PHROG	phrog_2566	NA	unknown function
UHGV-0180127_10	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-0180127_11	PHROG	phrog_1194	NA	unknown function
UHGV-0180127_11	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0180127_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180127_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180127_12	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0180127_12	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0180127_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180127_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180127_13	PHROG	phrog_8355	NA	unknown function
UHGV-0180127_13	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0180127_13	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0180127_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180127_13	Structural annotation	PF06854	NA	NA
UHGV-0180127_14	PHROG	phrog_8300	NA	unknown function
UHGV-0180127_14	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0180127_14	Structural annotation	PF06854	NA	NA
UHGV-0180127_15	PHROG	phrog_820	major tail protein	tail
UHGV-0180127_15	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0180127_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180127_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0180127_16	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0180127_16	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0180127_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0180127_16	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0180127_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180127_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0180127_18	PHROG	phrog_8710	NA	unknown function
UHGV-0180127_18	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0180127_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0180127_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180127_19	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0180127_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0180127_20	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0180127_20	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0180127_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180127_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0180127_21	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0180127_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0180127_23	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0180127_23	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0180127_24	PHROG	phrog_918	NA	unknown function
UHGV-0180127_24	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0180127_24	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0180127_24	Pfam	PF19791	NA	DUF6275
UHGV-0180127_24	Structural annotation	PF19791	NA	NA
UHGV-0180127_25	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0180127_25	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0180127_25	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0180127_25	Structural annotation	PF14359	NA	NA
UHGV-0180127_26	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0180127_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180127_27	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0180127_27	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0180127_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180127_27	Pfam	PF21814	NA	DUF6883
UHGV-0180127_27	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0180127_27	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0180127_28	PHROG	phrog_25639	NA	unknown function
UHGV-0180127_28	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0180127_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180127_29	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0180127_29	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0180127_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180127_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180127_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0180127_30	UniRef90	UniRef90_A0A415L5G2	Terminase	NA
UHGV-0180127_30	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0180127_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180127_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180127_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180127_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0180127_31	UniRef90	UniRef90_A0A6L8XU44	Terminase small subunit	NA
UHGV-0180127_31	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0180127_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180127_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0180127_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0180127_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180127_32	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0180127_32	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0180127_32	Structural annotation	PF02996	NA	NA
UHGV-0180127_33	PHROG	phrog_6568	NA	unknown function
UHGV-0180127_36	PHROG	phrog_7566	NA	unknown function
UHGV-0180127_36	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0180127_38	PHROG	phrog_15077	NA	unknown function
UHGV-0180127_38	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0180127_38	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0180127_38	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180127_38	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0180127_39	PHROG	phrog_8470	NA	unknown function
UHGV-0180127_39	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0180127_39	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-0180127_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0180127_39	Structural annotation	PF14284	NA	NA
UHGV-0180127_40	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0180127_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0180127_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0180127_41	UniRef90	UniRef90_A0A6L8XU60	RNase H type-1 domain-containing protein	NA
UHGV-0180127_41	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0180127_41	Pfam	PF00075	RNase H	RNase_H
UHGV-0180127_41	COG	COG0328	Ribonuclease HI	NA
UHGV-0180127_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0180127_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180127_42	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0180127_42	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0180127_42	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0180127_45	UniRef90	UniRef90_A0A1C5LFH5	DNA binding domain, excisionase family	NA
UHGV-0180127_45	eggNOG-mapper	476272.RUMHYD_02830	Helix-turn-helix domain	NA
UHGV-0180127_45	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0180127_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0180127_47	PHROG	phrog_31760	NA	unknown function
UHGV-0180127_50	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-0180127_50	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0180127_50	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0180127_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180127_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180127_51	UniRef90	UniRef90_A0A174A0I5	Bifunctional HTH-domain containing protein/aminotransferase	NA
UHGV-0180127_51	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-0180127_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180127_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180127_51	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0180127_52	UniRef90	UniRef90_A0A8E3SPD1	NA	NA
UHGV-0180127_52	eggNOG-mapper	1038869.AXAN01000065_gene6115	NA	NA
UHGV-0180127_52	Pfam	PF12686	NA	DUF3800
UHGV-0180127_52	Structural annotation	TIGR00729, COG1039	NA	NA
UHGV-0180127_53	PHROG	phrog_87	metallo-protease	other
UHGV-0180127_53	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0180127_53	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0180127_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0180127_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0180127_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0180127_54	KOfam	K14059	int; integrase	NA
UHGV-0180127_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0180127_54	UniRef90	UniRef90_UPI000E4334D3	tyrosine-type recombinase/integrase	NA
UHGV-0180127_54	eggNOG-mapper	476272.RUMHYD_02818	Belongs to the 'phage' integrase family	NA
UHGV-0180127_54	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0180127_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180127_54	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0180127_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180127_54	Structural annotation	PF14659, PF12286, MF_01808, NF007246, COG4973	NA	NA