UHGV-0180179

Genome information

Genome length 35,592 bps

CDS count 42

Completeness 59.09% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180179
vOTU ID	vOTU-029131
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591447
BioSample	SAMN09781791
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.26
Jumbo phage	No

Genome content
Genome length	35,592 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.61%
Average CDS length	796.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180179_1	PHROG	phrog_4259	NA	unknown function
UHGV-0180179_1	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0180179_1	eggNOG-mapper	691965.D4P7B9_9CAUD	NA	NA
UHGV-0180179_2	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180179_2	eggNOG-mapper	742733.HMPREF9469_05036	NA	NA
UHGV-0180179_4	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0180179_4	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0180179_5	PHROG	phrog_3754	NA	unknown function
UHGV-0180179_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0180179_6	PHROG	phrog_21718	NA	unknown function
UHGV-0180179_8	PHROG	phrog_16490	NA	unknown function
UHGV-0180179_8	eggNOG-mapper	1485543.JMME01000025_gene2459	NA	NA
UHGV-0180179_9	PHROG	phrog_20016	NA	unknown function
UHGV-0180179_9	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0180179_9	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0180179_9	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180179_11	PHROG	phrog_199	holin	lysis
UHGV-0180179_11	UniRef90	UniRef90_A0A1H6XM70	Toxin secretion/phage lysis holin	NA
UHGV-0180179_11	eggNOG-mapper	1087481.AGFX01000029_gene1119	Bacteriophage holin family	NA
UHGV-0180179_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0180179_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0180179_11	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0180179_11	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0180179_12	PHROG	phrog_32444	NA	unknown function
UHGV-0180179_12	eggNOG-mapper	478749.BRYFOR_08525	NA	NA
UHGV-0180179_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180179_13	UniRef90	UniRef90_A0A173Z354	Phage terminase-like protein, large subunit	NA
UHGV-0180179_13	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-0180179_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180179_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180179_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180179_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180179_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180179_14	UniRef90	UniRef90_A0A7X5EBN7	Phage portal protein	NA
UHGV-0180179_14	eggNOG-mapper	742740.HMPREF9474_02271	Phage portal protein	NA
UHGV-0180179_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180179_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180179_15	KOfam	K06904	NA	NA
UHGV-0180179_15	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0180179_15	UniRef90	UniRef90_UPI001967B1BC	phage major capsid protein	NA
UHGV-0180179_15	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0180179_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0180179_15	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0180179_16	PHROG	phrog_4270	NA	unknown function
UHGV-0180179_16	eggNOG-mapper	742740.HMPREF9474_02268	NA	NA
UHGV-0180179_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180179_17	UniRef90	UniRef90_A0A5J6D7U9	Tail terminator	NA
UHGV-0180179_17	eggNOG-mapper	665956.HMPREF1032_00678	NA	NA
UHGV-0180179_17	Structural annotation	PF20765	NA	NA
UHGV-0180179_18	PHROG	phrog_2645	major tail protein	tail
UHGV-0180179_18	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0180179_18	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0180179_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0180179_19	PHROG	phrog_4282	NA	unknown function
UHGV-0180179_19	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0180179_20	PHROG	phrog_4338	NA	unknown function
UHGV-0180179_20	eggNOG-mapper	742733.HMPREF9469_05023	NA	NA
UHGV-0180179_21	KOfam	K07273	acm; lysozyme	NA
UHGV-0180179_21	PHROG	phrog_291	endolysin	lysis
UHGV-0180179_21	UniRef90	UniRef90_D4CBH7	Glycosyl hydrolase family 25	NA
UHGV-0180179_21	eggNOG-mapper	879305.HMPREF9290_1609	hydrolase family 25	NA
UHGV-0180179_21	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180179_21	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0180179_21	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180179_22	UniRef90	UniRef90_A0A3E2V879	HK97 gp10 family phage protein	NA
UHGV-0180179_22	eggNOG-mapper	428125.CLOLEP_01421	NA	NA
UHGV-0180179_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0180179_22	Structural annotation	TIGR01725	NA	NA
UHGV-0180179_23	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0180179_23	UniRef90	UniRef90_A0A351RFM5	TMP_3 domain-containing protein	NA
UHGV-0180179_23	eggNOG-mapper	428125.CLOLEP_01422	phage tail tape measure protein	NA
UHGV-0180179_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180179_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180179_23	COG	COG5412	Phage-related protein	NA
UHGV-0180179_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0180179_24	UniRef90	UniRef90_UPI00040E71D3	phage tail family protein	NA
UHGV-0180179_24	eggNOG-mapper	938289.CAJN020000007_gene305	NA	NA
UHGV-0180179_24	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0180179_25	PHROG	phrog_3558	tail protein	tail
UHGV-0180179_25	UniRef90	UniRef90_A0A6N9PF82	Prophage_tail domain-containing protein (Fragment)	NA
UHGV-0180179_25	eggNOG-mapper	904144.AEJD01000006_gene571	Prophage endopeptidase tail	NA
UHGV-0180179_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180179_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180179_25	COG	COG4926	Phage-related protein	NA
UHGV-0180179_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180179_27	PHROG	phrog_5555	tail protein	tail
UHGV-0180179_27	UniRef90	UniRef90_UPI00189B3A54	phage tail protein	NA
UHGV-0180179_27	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0180179_27	COG	COG4926	Phage-related protein	NA
UHGV-0180179_32	PHROG	phrog_2152	NA	unknown function
UHGV-0180179_32	UniRef90	UniRef90_UPI00189C67CC	NA	NA
UHGV-0180179_32	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0180179_32	Pfam	PF19880	NA	DUF6353
UHGV-0180179_32	Structural annotation	PF19880	NA	NA
UHGV-0180179_35	PHROG	phrog_2152	NA	unknown function
UHGV-0180179_35	UniRef90	UniRef90_UPI00137B24BF	NA	NA
UHGV-0180179_35	eggNOG-mapper	742740.HMPREF9474_02314	NA	NA
UHGV-0180179_35	Pfam	PF19880	NA	DUF6353
UHGV-0180179_35	Structural annotation	PF19880	NA	NA
UHGV-0180179_36	PHROG	phrog_4079	NA	unknown function
UHGV-0180179_36	eggNOG-mapper	691965.D4P7H8_9CAUD	NA	NA
UHGV-0180179_38	PHROG	phrog_2152	NA	unknown function
UHGV-0180179_38	UniRef90	UniRef90_UPI0019578B0D	NA	NA
UHGV-0180179_38	eggNOG-mapper	478749.BRYFOR_08565	NA	NA
UHGV-0180179_38	Pfam	PF19880	NA	DUF6353
UHGV-0180179_38	Structural annotation	PF19880	NA	NA
UHGV-0180179_42	KOfam	K02336	polB; DNA polymerase II [EC:2.7.7.7]	NA
UHGV-0180179_42	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180179_42	UniRef90	UniRef90_A0A7X5IUT2	SF3 helicase domain-containing protein	NA
UHGV-0180179_42	eggNOG-mapper	411460.RUMTOR_02036	NA	NA
UHGV-0180179_42	Pfam	PF19263	NA	DUF5906
UHGV-0180179_42	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA