UHGV-0180206

Genome information

Genome length 41,319 bps

CDS count 59

Completeness 96.40% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180206
vOTU ID	vOTU-067479
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_591880
BioSample	SAMN09781733
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.79
Jumbo phage	No

Genome content
Genome length	41,319 bps
GC content	42.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.83%
Average CDS length	638.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180206_1	PHROG	phrog_22978	NA	unknown function
UHGV-0180206_1	eggNOG-mapper	871968.DESME_08840	NA	NA
UHGV-0180206_1	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0180206_3	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0180206_3	PHROG	phrog_2649	endolysin	lysis
UHGV-0180206_3	UniRef90	UniRef90_R6C8U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180206_3	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0180206_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180206_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180206_3	Structural annotation	COG3409	NA	NA
UHGV-0180206_4	PHROG	phrog_199	holin	lysis
UHGV-0180206_4	UniRef90	UniRef90_A0A3D4HRA5	Holin	NA
UHGV-0180206_4	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0180206_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0180206_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0180206_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0180206_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0180206_6	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-0180206_7	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0180206_7	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0180206_7	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0180206_8	PHROG	phrog_13046	NA	unknown function
UHGV-0180206_8	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-0180206_8	Structural annotation	PF20387, NF038128, COG5156	NA	NA
UHGV-0180206_10	PHROG	phrog_371	major head protein	head and packaging
UHGV-0180206_10	UniRef90	UniRef90_A0A1Z8VY81	Mu-like_gpT domain-containing protein	NA
UHGV-0180206_10	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0180206_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180206_11	PHROG	phrog_24113	NA	unknown function
UHGV-0180206_11	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0180206_11	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0180206_12	PHROG	phrog_35275	NA	unknown function
UHGV-0180206_12	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0180206_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180206_14	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0180206_14	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0180206_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180206_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0180206_15	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0180206_15	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0180206_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180206_15	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0180206_16	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0180206_16	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0180206_16	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0180206_16	Structural annotation	PF16677	NA	NA
UHGV-0180206_17	Pfam	PF08681	NA	DUF1778
UHGV-0180206_17	Structural annotation	PF03869, NF040976, COG4453	NA	NA
UHGV-0180206_19	PHROG	phrog_15863	NA	unknown function
UHGV-0180206_19	UniRef90	UniRef90_UPI000555AF35	J domain-containing protein	NA
UHGV-0180206_19	eggNOG-mapper	888064.HMPREF9088_2252	DnaJ molecular chaperone homology domain	NA
UHGV-0180206_19	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0180206_21	Structural annotation	COG1724	NA	NA
UHGV-0180206_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180206_23	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0180206_23	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA
UHGV-0180206_24	eggNOG-mapper	397291.C804_06335	NA	NA
UHGV-0180206_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0180206_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0180206_25	UniRef90	UniRef90_UPI00084915C6	tyrosine-type recombinase/integrase	NA
UHGV-0180206_25	eggNOG-mapper	411468.CLOSCI_00297	Belongs to the 'phage' integrase family	NA
UHGV-0180206_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0180206_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180206_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180206_25	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0180206_27	UniRef90	UniRef90_UPI00189796FC	zinc-ribbon domain-containing protein	NA
UHGV-0180206_27	Structural annotation	PF13248	NA	NA
UHGV-0180206_28	UniRef90	UniRef90_A0A3D5M0V6	RHH_1 domain-containing protein	NA
UHGV-0180206_28	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0180206_28	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0180206_29	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0180206_29	eggNOG-mapper	411461.DORFOR_01154	COG NOG12663 non supervised orthologous group	NA
UHGV-0180206_29	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0180206_30	PHROG	phrog_30343	NA	unknown function
UHGV-0180206_30	eggNOG-mapper	397291.C804_00939	NA	NA
UHGV-0180206_30	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0180206_33	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180206_33	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-0180206_33	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0180206_33	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0180206_33	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0180206_33	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0180206_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0180206_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180206_34	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0180206_34	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0180206_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0180206_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180206_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0180206_34	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0180206_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180206_36	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0180206_36	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0180206_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180206_36	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0180206_38	PHROG	phrog_10867	NA	unknown function
UHGV-0180206_38	eggNOG-mapper	411470.RUMGNA_00209	NA	NA
UHGV-0180206_39	PHROG	phrog_874	NA	unknown function
UHGV-0180206_39	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0180206_39	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0180206_39	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0180206_41	PHROG	phrog_8684	NA	unknown function
UHGV-0180206_41	UniRef90	UniRef90_A0A416AFR1	YopX domain-containing protein	NA
UHGV-0180206_41	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0180206_41	Pfam	PF09643	YopX protein	YopX
UHGV-0180206_41	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0180206_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0180206_42	PHROG	phrog_15198	NA	unknown function
UHGV-0180206_42	UniRef90	UniRef90_UPI000CF85C21	NA	NA
UHGV-0180206_42	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0180206_42	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0180206_45	PHROG	phrog_19106	NA	unknown function
UHGV-0180206_45	UniRef90	UniRef90_A0A6L5YG76	GIY-YIG nuclease family protein	NA
UHGV-0180206_45	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0180206_45	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0180206_45	Structural annotation	TIGR01453	NA	NA
UHGV-0180206_47	PHROG	phrog_15768	NA	unknown function
UHGV-0180206_47	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0180206_47	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0180206_48	PHROG	phrog_398	NA	unknown function
UHGV-0180206_48	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0180206_48	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0180206_48	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0180206_48	Structural annotation	PF16784	NA	NA
UHGV-0180206_49	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180206_49	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0180206_49	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0180206_49	Pfam	PF06378	NA	DUF1071
UHGV-0180206_49	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0180206_50	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0180206_55	UniRef90	UniRef90_A0A417QIK9	HTH cro/C1-type domain-containing protein	NA
UHGV-0180206_55	eggNOG-mapper	1304866.K413DRAFT_0802	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180206_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180206_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180206_56	UniRef90	UniRef90_R7N1J3	Helix-turn-helix domain protein	NA
UHGV-0180206_56	eggNOG-mapper	908339.HMPREF9265_1643	Transcriptional regulator, Cro CI family	NA
UHGV-0180206_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180206_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180206_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180206_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180206_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180206_57	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0180206_57	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180206_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180206_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180206_57	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180206_58	PHROG	phrog_20886	NA	unknown function
UHGV-0180206_58	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0180206_58	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0180206_58	Structural annotation	PF06114	NA	NA
UHGV-0180206_59	eggNOG-mapper	1009370.ALO_15872	NA	NA
UHGV-0180206_59	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA