UHGV-0180230

Genome information

Genome length 46,427 bps

CDS count 79

Completeness 99.90% (high-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180230
vOTU ID	vOTU-011030
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582552
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.85
Jumbo phage	No

Genome content
Genome length	46,427 bps
GC content	32.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	87.30%
Average CDS length	516.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180230_5	PHROG	phrog_15198	NA	unknown function
UHGV-0180230_5	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0180230_5	Pfam	PF04448	NA	DUF551
UHGV-0180230_9	Structural annotation	PF11061	NA	NA
UHGV-0180230_13	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0180230_13	Pfam	PF07374	NA	DUF1492
UHGV-0180230_13	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0180230_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0180230_14	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0180230_14	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0180230_15	PHROG	phrog_2316	NA	unknown function
UHGV-0180230_15	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0180230_15	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0180230_15	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0180230_16	PHROG	phrog_4525	NA	unknown function
UHGV-0180230_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180230_24	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0180230_24	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0180230_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180230_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0180230_25	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0180230_25	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0180230_25	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0180230_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0180230_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0180230_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0180230_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180230_26	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0180230_26	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0180230_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180230_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180230_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180230_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180230_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180230_27	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0180230_27	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0180230_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180230_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180230_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180230_28	KOfam	K06904	NA	NA
UHGV-0180230_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0180230_28	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0180230_28	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0180230_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0180230_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0180230_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0180230_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0180230_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180230_29	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0180230_29	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0180230_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180230_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180230_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180230_29	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180230_30	PHROG	phrog_5223	neck protein	connector
UHGV-0180230_30	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0180230_30	Structural annotation	TIGR01560	NA	NA
UHGV-0180230_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0180230_31	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0180230_31	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0180230_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0180230_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0180230_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180230_32	eggNOG-mapper	1145276.T479_19945	NA	NA
UHGV-0180230_32	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0180230_33	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0180230_33	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0180230_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0180230_34	PHROG	phrog_88	major tail protein	tail
UHGV-0180230_34	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0180230_34	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0180230_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180230_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0180230_35	PHROG	phrog_709	NA	unknown function
UHGV-0180230_35	Structural annotation	PF11836	NA	NA
UHGV-0180230_36	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0180230_36	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0180230_36	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0180230_36	eggNOG-mapper	1117379.BABA_17397	Phage tail tape measure protein, TP901 family	NA
UHGV-0180230_36	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0180230_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0180230_36	COG	COG5283	Phage-related tail protein	NA
UHGV-0180230_36	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0180230_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180230_37	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0180230_37	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0180230_37	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0180230_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180230_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180230_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180230_38	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0180230_38	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0180230_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180230_38	COG	COG4926	Phage-related protein	NA
UHGV-0180230_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180230_39	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0180230_40	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0180230_41	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0180230_42	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0180230_42	PHROG	phrog_13015	virion structural protein	head and packaging
UHGV-0180230_42	eggNOG-mapper	1121090.KB894688_gene1798	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0180230_42	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0180230_42	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0180230_42	Structural annotation	PF10651, PF11476, NF007819, COG1621	NA	NA
UHGV-0180230_47	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0180230_47	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0180230_48	PHROG	phrog_20016	NA	unknown function
UHGV-0180230_48	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0180230_48	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0180230_48	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0180230_48	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180230_50	PHROG	phrog_443	holin	lysis
UHGV-0180230_50	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0180230_50	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0180230_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0180230_50	Structural annotation	PF16945	NA	NA
UHGV-0180230_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180230_52	PHROG	phrog_7698	endolysin	lysis
UHGV-0180230_52	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180230_52	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0180230_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0180230_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0180230_52	Structural annotation	COG5632	NA	NA
UHGV-0180230_53	KOfam	K14059	int; integrase	NA
UHGV-0180230_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0180230_53	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0180230_53	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0180230_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180230_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180230_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180230_56	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180230_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0180230_56	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-0180230_56	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180230_56	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0180230_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180230_56	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0180230_58	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-0180230_58	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0180230_58	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0180230_61	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-0180230_64	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0180230_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0180230_64	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0180230_64	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0180230_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180230_64	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180230_64	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0180230_66	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180230_66	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0180230_66	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0180230_66	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0180230_66	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0180230_66	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180230_66	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0180230_67	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180230_67	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180230_67	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0180230_67	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0180230_67	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0180230_67	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0180230_67	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0180230_68	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0180230_68	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0180230_71	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0180230_72	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0180230_72	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-0180230_72	eggNOG-mapper	218284.CCDN010000001_gene545	dUTPase	NA
UHGV-0180230_72	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0180230_72	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0180230_72	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0180230_74	Structural annotation	PF19801	NA	NA
UHGV-0180230_77	PHROG	phrog_7711	NA	unknown function
UHGV-0180230_77	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0180230_77	eggNOG-mapper	189425.PGRAT_24145	NA	NA
UHGV-0180230_77	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev