UHGV-0180235

Genome information

Genome length 27,219 bps

CDS count 31

Completeness 64.39% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180235
vOTU ID	vOTU-029138
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586851
BioSample	SAMN09781722
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.79
Jumbo phage	No

Genome content
Genome length	27,219 bps
GC content	34.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	92.89%
Average CDS length	816.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180235_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180235_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180235_1	UniRef90	UniRef90_UPI00156F13F1	helix-turn-helix domain-containing protein	NA
UHGV-0180235_1	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0180235_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180235_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180235_1	Structural annotation	PF12844, MF_02017, NF007257, COG1476	NA	NA
UHGV-0180235_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180235_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0180235_3	UniRef90	UniRef90_UPI00156DD3BB	helix-turn-helix domain-containing protein	NA
UHGV-0180235_3	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180235_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180235_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180235_3	Structural annotation	PF01381, MF_02017, NF007257, COG1396	NA	NA
UHGV-0180235_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0180235_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180235_4	UniRef90	UniRef90_A0A412Q237	XRE family transcriptional regulator	NA
UHGV-0180235_4	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180235_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0180235_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180235_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0180235_4	NCBIFam	TIGR03830.1	type II TA system antitoxin MqsA family protein	NA
UHGV-0180235_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180235_4	Structural annotation	PF01381, PF13560, MF_00535, NF007257, NF040507, COG1476, COG3655	NA	NA
UHGV-0180235_5	KOfam	K14059	int; integrase	NA
UHGV-0180235_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0180235_5	UniRef90	UniRef90_R6FPR5	Tyr recombinase domain-containing protein	NA
UHGV-0180235_5	eggNOG-mapper	1235793.C809_00531	Phage integrase family	NA
UHGV-0180235_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180235_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180235_5	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0180235_6	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0180235_6	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-0180235_6	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0180235_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0180235_6	Structural annotation	PF02631, MF_01114, NF001056, COG2137	NA	NA
UHGV-0180235_7	eggNOG-mapper	269799.Gmet_0817	NA	NA
UHGV-0180235_8	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0180235_8	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0180235_8	UniRef90	UniRef90_A0A3D5M145	Toxin HicA	NA
UHGV-0180235_8	eggNOG-mapper	411468.CLOSCI_01516	periplasmic or secreted lipoprotein	NA
UHGV-0180235_8	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0180235_8	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0180235_8	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0180235_9	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0180235_9	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0180235_9	UniRef90	UniRef90_B0NDI7	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0180235_9	eggNOG-mapper	411468.CLOSCI_01515	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0180235_9	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0180235_9	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0180235_9	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0180235_10	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180235_10	PHROG	phrog_1794	amidase	lysis
UHGV-0180235_10	UniRef90	UniRef90_A0A0D0S4H7	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0180235_10	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0180235_10	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0180235_10	COG	COG1388	LysM repeat	NA
UHGV-0180235_10	Structural annotation	PF01510, PF18342, MF_04111, COG5632	NA	NA
UHGV-0180235_11	UniRef90	UniRef90_A0A2V2FMG9	CTP synthase	NA
UHGV-0180235_11	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-0180235_12	PHROG	phrog_1129	holin	lysis
UHGV-0180235_12	UniRef90	UniRef90_A0A414P831	Holin	NA
UHGV-0180235_12	eggNOG-mapper	478749.BRYFOR_08506	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180235_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180235_12	Structural annotation	PF06946	NA	NA
UHGV-0180235_13	PHROG	phrog_1220	head protein	head and packaging
UHGV-0180235_13	UniRef90	UniRef90_A0A098AU84	Conserved domain protein	NA
UHGV-0180235_13	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0180235_13	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0180235_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0180235_14	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0180235_14	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0180235_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0180235_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180235_15	PHROG	phrog_36410	NA	unknown function
UHGV-0180235_15	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0180235_15	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0180235_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0180235_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180235_15	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0180235_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0180235_16	PHROG	phrog_5218	NA	unknown function
UHGV-0180235_16	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-0180235_16	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0180235_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0180235_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0180235_18	PHROG	phrog_88	major tail protein	tail
UHGV-0180235_18	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0180235_18	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0180235_18	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0180235_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180235_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0180235_19	Structural annotation	PF05657	NA	NA
UHGV-0180235_20	Structural annotation	TIGR01725	NA	NA
UHGV-0180235_21	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0180235_21	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0180235_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0180235_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0180235_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180235_22	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0180235_22	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0180235_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0180235_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0180235_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180235_23	UniRef90	UniRef90_UPI00156E5E69	phage major capsid protein	NA
UHGV-0180235_23	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0180235_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180235_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180235_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180235_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180235_24	KOfam	K06904	NA	NA
UHGV-0180235_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0180235_24	UniRef90	UniRef90_UPI00156EFB92	HK97 family phage prohead protease	NA
UHGV-0180235_24	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0180235_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0180235_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0180235_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0180235_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0180235_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180235_25	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0180235_25	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0180235_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180235_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180235_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180235_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180235_26	UniRef90	UniRef90_A0A415G6S8	Terminase large subunit	NA
UHGV-0180235_26	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0180235_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180235_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180235_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180235_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0180235_27	PHROG	phrog_1066	NA	unknown function
UHGV-0180235_27	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0180235_28	PHROG	phrog_1330	tail protein	tail
UHGV-0180235_28	eggNOG-mapper	1316932.MHH_c16560	Phage-related protein, tail component	NA
UHGV-0180235_28	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0180235_29	PHROG	phrog_36886	NA	unknown function
UHGV-0180235_29	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0180235_29	COG	COG5301	Phage-related tail fiber protein	NA