UHGV-0180242

Genome information

Genome length 43,810 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180242
vOTU ID	vOTU-009300
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590684
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.15
Jumbo phage	No

Genome content
Genome length	43,810 bps
GC content	51.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	92.99%
Average CDS length	670.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180242_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180242_1	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0180242_1	UniRef90	UniRef90_UPI00115BDA84	terminase small subunit	NA
UHGV-0180242_1	eggNOG-mapper	1260356.D920_01729	Terminase small subunit	NA
UHGV-0180242_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180242_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0180242_1	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0180242_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180242_2	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0180242_2	UniRef90	UniRef90_UPI00164BD94B	phage terminase large subunit	NA
UHGV-0180242_2	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0180242_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180242_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180242_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180242_3	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180242_3	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0180242_3	Structural annotation	PF12236, MF_04120, TIGR01542, COG5518	NA	NA
UHGV-0180242_5	PHROG	phrog_35275	NA	unknown function
UHGV-0180242_6	PHROG	phrog_24113	NA	unknown function
UHGV-0180242_6	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0180242_6	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0180242_7	PHROG	phrog_371	major head protein	head and packaging
UHGV-0180242_7	UniRef90	UniRef90_A0A1Y4TDW7	Mu-like_gpT domain-containing protein	NA
UHGV-0180242_7	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0180242_7	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0180242_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180242_9	PHROG	phrog_13046	NA	unknown function
UHGV-0180242_9	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0180242_9	Structural annotation	PF20387	NA	NA
UHGV-0180242_10	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0180242_10	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0180242_10	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0180242_11	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0180242_14	PHROG	phrog_24267	NA	unknown function
UHGV-0180242_14	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0180242_14	eggNOG-mapper	1035184.HMPREF1042_1210	NA	NA
UHGV-0180242_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0180242_14	Structural annotation	COG4675	NA	NA
UHGV-0180242_15	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0180242_15	Structural annotation	NF040910	NA	NA
UHGV-0180242_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0180242_16	PHROG	phrog_291	endolysin	lysis
UHGV-0180242_16	UniRef90	UniRef90_A0A4R1QM33	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0180242_16	eggNOG-mapper	537013.CLOSTMETH_01756	hydrolase, family 25	NA
UHGV-0180242_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180242_16	COG	COG1388	LysM repeat	NA
UHGV-0180242_16	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0180242_17	PHROG	phrog_937	hemolysin	other
UHGV-0180242_17	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0180242_18	PHROG	phrog_1129	holin	lysis
UHGV-0180242_18	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0180242_18	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0180242_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180242_18	Structural annotation	PF16079	NA	NA
UHGV-0180242_20	PHROG	phrog_22978	NA	unknown function
UHGV-0180242_20	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-0180242_20	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0180242_21	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0180242_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180242_24	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0180242_24	UniRef90	UniRef90_UPI000774583B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0180242_24	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0180242_24	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0180242_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180242_24	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0180242_24	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0180242_28	KOfam	K14059	int; integrase	NA
UHGV-0180242_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0180242_28	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0180242_28	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0180242_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180242_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180242_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180242_28	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180242_29	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0180242_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180242_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180242_29	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180242_31	PHROG	phrog_14556	NA	unknown function
UHGV-0180242_31	eggNOG-mapper	1195236.CTER_1175	competence protein COMEC	NA
UHGV-0180242_31	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0180242_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180242_32	UniRef90	UniRef90_A0A329UR16	HTH cro/C1-type domain-containing protein	NA
UHGV-0180242_32	eggNOG-mapper	1121085.AUCI01000010_gene502	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180242_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180242_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180242_33	UniRef90	UniRef90_A0A329ULP4	Excisionase	NA
UHGV-0180242_33	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0180242_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0180242_33	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0180242_33	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0180242_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0180242_36	PHROG	phrog_7940	NA	unknown function
UHGV-0180242_36	UniRef90	UniRef90_UPI00040C8792	Bro-N domain-containing protein	NA
UHGV-0180242_36	eggNOG-mapper	1688.BCUN_0221	BRO family, N-terminal domain	NA
UHGV-0180242_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180242_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0180242_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180242_37	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180242_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180242_37	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0180242_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180242_38	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0180242_38	UniRef90	UniRef90_A0A1Q6R5B0	Bro-N domain-containing protein	NA
UHGV-0180242_38	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0180242_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180242_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180242_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0180242_38	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0180242_39	PHROG	phrog_7964	NA	unknown function
UHGV-0180242_39	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0180242_39	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0180242_39	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0180242_39	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0180242_39	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0180242_39	Structural annotation	NF040481	NA	NA
UHGV-0180242_44	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180242_44	UniRef90	UniRef90_A0A7X6XAG1	Endonuclease	NA
UHGV-0180242_44	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-0180242_44	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0180242_44	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0180242_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0180242_44	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0180242_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0180242_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180242_45	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0180242_45	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0180242_45	Pfam	PF03837	RecT family	RecT
UHGV-0180242_45	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0180242_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0180242_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0180242_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180242_46	UniRef90	UniRef90_A0A2E3PG19	Single-stranded DNA-binding protein	NA
UHGV-0180242_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180242_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180242_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180242_49	PHROG	phrog_1163	NA	unknown function
UHGV-0180242_49	UniRef90	UniRef90_UPI0015C5F92B	conserved phage C-terminal domain-containing protein	NA
UHGV-0180242_49	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0180242_49	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0180242_49	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0180242_49	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0180242_49	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0180242_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180242_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180242_50	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0180242_50	eggNOG-mapper	428125.CLOLEP_03477	NA	NA
UHGV-0180242_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0180242_50	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0180242_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0180242_50	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0180242_53	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0180242_53	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0180242_53	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-0180242_53	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0180242_53	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0180242_53	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180242_53	COG	COG0863	DNA modification methylase	NA
UHGV-0180242_53	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0180242_55	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180242_55	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0180242_55	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0180242_55	Pfam	PF06356	NA	DUF1064
UHGV-0180242_55	Structural annotation	PF06356	NA	NA
UHGV-0180242_58	Structural annotation	PF02888	NA	NA
UHGV-0180242_61	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0180242_61	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0180242_61	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180242_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180242_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA