UHGV-0180243

Genome information

Genome length 41,395 bps

CDS count 72

Completeness 96.57% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180243
vOTU ID	vOTU-074586
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582556
BioSample	SAMN09781780
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.98
Jumbo phage	No

Genome content
Genome length	41,395 bps
GC content	43.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	94.00%
Average CDS length	545.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180243_2	UniRef90	UniRef90_E9RTH1	HTH luxR-type domain-containing protein	NA
UHGV-0180243_2	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0180243_3	UniRef90	UniRef90_A0A416JGA1	Helix-turn-helix domain-containing protein	NA
UHGV-0180243_3	eggNOG-mapper	888727.HMPREF9092_1413	Helix-turn-helix	NA
UHGV-0180243_3	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0180243_3	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0180243_5	Structural annotation	PF12510	NA	NA
UHGV-0180243_6	PHROG	phrog_20016	NA	unknown function
UHGV-0180243_6	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0180243_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180243_7	PHROG	phrog_16490	NA	unknown function
UHGV-0180243_7	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0180243_8	PHROG	phrog_22984	NA	unknown function
UHGV-0180243_9	PHROG	phrog_21718	NA	unknown function
UHGV-0180243_9	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0180243_9	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180243_10	PHROG	phrog_3754	NA	unknown function
UHGV-0180243_10	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0180243_11	eggNOG-mapper	1408311.JNJM01000003_gene2963	NA	NA
UHGV-0180243_12	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0180243_14	PHROG	phrog_14030	NA	unknown function
UHGV-0180243_14	UniRef90	UniRef90_A0A3A8X6C4	Peptidoglycan-binding protein	NA
UHGV-0180243_14	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0180243_14	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-0180243_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0180243_15	UniRef90	UniRef90_A0A417BWH3	NA	NA
UHGV-0180243_15	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0180243_15	Pfam	PF14359	NA	DUF4406
UHGV-0180243_15	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0180243_16	PHROG	phrog_443	holin	lysis
UHGV-0180243_16	UniRef90	UniRef90_UPI00191F102F	holin	NA
UHGV-0180243_16	eggNOG-mapper	1314.HKU360_01470	NA	NA
UHGV-0180243_16	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0180243_16	Structural annotation	PF16945	NA	NA
UHGV-0180243_17	PHROG	phrog_1863	NA	unknown function
UHGV-0180243_17	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0180243_18	eggNOG-mapper	641524.ADICYQ_1391	lipolytic protein G-D-S-L family	NA
UHGV-0180243_18	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0180243_19	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0180243_20	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180243_20	UniRef90	UniRef90_A0A7G9G6Y3	Phage tail protein	NA
UHGV-0180243_20	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0180243_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180243_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180243_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180243_20	COG	COG4926	Phage-related protein	NA
UHGV-0180243_20	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0180243_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180243_21	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0180243_21	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0180243_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180243_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180243_22	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0180243_22	UniRef90	UniRef90_A0A3C1WR03	Phage tail tape measure protein	NA
UHGV-0180243_22	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0180243_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0180243_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0180243_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0180243_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180243_25	PHROG	phrog_885	major tail protein	tail
UHGV-0180243_25	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0180243_25	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0180243_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0180243_26	Structural annotation	PF11367	NA	NA
UHGV-0180243_27	PHROG	phrog_1233	NA	unknown function
UHGV-0180243_27	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0180243_27	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0180243_28	PHROG	phrog_17977	NA	unknown function
UHGV-0180243_28	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0180243_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180243_30	PHROG	phrog_247	major head protein	head and packaging
UHGV-0180243_30	UniRef90	UniRef90_UPI001E4E7823	phage coat protein	NA
UHGV-0180243_30	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0180243_30	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0180243_30	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0180243_31	Structural annotation	PF06810	NA	NA
UHGV-0180243_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180243_32	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0180243_32	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0180243_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0180243_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0180243_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0180243_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0180243_33	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0180243_33	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-0180243_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0180243_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0180243_33	COG	COG2369	NA	NA
UHGV-0180243_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0180243_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180243_34	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0180243_34	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180243_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180243_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0180243_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180243_35	PHROG	phrog_10250	NA	unknown function
UHGV-0180243_35	UniRef90	UniRef90_UPI00059A8066	PBSX family phage terminase large subunit	NA
UHGV-0180243_35	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0180243_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180243_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0180243_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180243_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180243_35	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180243_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180243_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0180243_36	UniRef90	UniRef90_UPI001C10A749	terminase small subunit	NA
UHGV-0180243_36	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0180243_36	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0180243_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180243_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0180243_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0180243_37	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0180243_40	eggNOG-mapper	568816.Acin_1921	sequence-specific DNA binding	NA
UHGV-0180243_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180243_43	UniRef90	UniRef90_UPI00157067F8	NA	NA
UHGV-0180243_46	PHROG	phrog_6072	NA	unknown function
UHGV-0180243_48	PHROG	phrog_9804	NA	unknown function
UHGV-0180243_48	UniRef90	UniRef90_A0A1C5T9U7	Loader and inhibitor of phage G40P	NA
UHGV-0180243_48	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0180243_48	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0180243_48	Structural annotation	PF11417	NA	NA
UHGV-0180243_49	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180243_49	eggNOG-mapper	1232453.BAIF02000057_gene1144	NA	NA
UHGV-0180243_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180243_50	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0180243_50	UniRef90	UniRef90_A0A1Y4F3T0	Phage_rep_org_N domain-containing protein	NA
UHGV-0180243_50	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0180243_50	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0180243_50	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0180243_50	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0180243_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180243_52	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0180243_52	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0180243_52	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0180243_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180243_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180243_53	UniRef90	UniRef90_R6Z8U9	Single-stranded DNA-binding protein	NA
UHGV-0180243_53	eggNOG-mapper	796942.HMPREF9623_02068	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180243_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180243_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180243_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180243_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180243_53	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0180243_54	eggNOG-mapper	991905.SL003B_3762	NA	NA
UHGV-0180243_55	PHROG	phrog_14970	NA	unknown function
UHGV-0180243_55	eggNOG-mapper	1235799.C818_00195	double-strand break repair protein	NA
UHGV-0180243_55	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0180243_55	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0180243_55	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0180243_58	eggNOG-mapper	500632.CLONEX_02664	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0180243_58	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0180243_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0180243_59	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0180243_59	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0180243_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0180243_59	Structural annotation	PF05565	NA	NA
UHGV-0180243_65	PHROG	phrog_4433	NA	unknown function
UHGV-0180243_65	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0180243_65	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0180243_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180243_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180243_69	UniRef90	UniRef90_A0A4S2A8B1	XRE family transcriptional regulator	NA
UHGV-0180243_69	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0180243_69	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0180243_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180243_69	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180243_69	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0180243_70	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180243_70	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0180243_70	UniRef90	UniRef90_R6RH65	DNA-binding helix-turn-helix protein	NA
UHGV-0180243_70	eggNOG-mapper	459349.CLOAM0116	Evidence 5 No homology to any previously reported sequences	NA
UHGV-0180243_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180243_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180243_70	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0180243_72	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180243_72	PHROG	phrog_95	integrase	integration and excision
UHGV-0180243_72	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0180243_72	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0180243_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180243_72	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180243_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180243_72	Structural annotation	PF00239, NF041201, COG1961	NA	NA