UHGV-0180251

Genome information

Genome length 42,366 bps

CDS count 65

Completeness 98.65% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180251
vOTU ID	vOTU-069447
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588218
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.87
Jumbo phage	No

Genome content
Genome length	42,366 bps
GC content	54.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.64%
Average CDS length	581.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180251_1	PHROG	phrog_16490	NA	unknown function
UHGV-0180251_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180251_2	PHROG	phrog_22984	NA	unknown function
UHGV-0180251_3	PHROG	phrog_21718	NA	unknown function
UHGV-0180251_3	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180251_4	PHROG	phrog_3754	NA	unknown function
UHGV-0180251_4	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0180251_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180251_6	PHROG	phrog_435	endolysin	lysis
UHGV-0180251_6	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180251_6	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0180251_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0180251_6	Pfam	PF05036	SPOR domain	SPOR
UHGV-0180251_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180251_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0180251_7	PHROG	phrog_199	holin	lysis
UHGV-0180251_7	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0180251_7	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0180251_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0180251_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0180251_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0180251_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0180251_9	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-0180251_9	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0180251_9	COG	COG4877	NA	NA
UHGV-0180251_9	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0180251_11	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0180251_11	PHROG	phrog_14824	NA	unknown function
UHGV-0180251_11	UniRef90	UniRef90_R6GIV0	Beta_helix domain-containing protein	NA
UHGV-0180251_11	eggNOG-mapper	1121920.AUAU01000019_gene2582	polygalacturonase activity	NA
UHGV-0180251_11	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0180251_11	COG	COG5434	Polygalacturonase	NA
UHGV-0180251_15	Structural annotation	PF10651, COG3330	NA	NA
UHGV-0180251_16	PHROG	phrog_372	tail protein	tail
UHGV-0180251_16	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0180251_16	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0180251_16	Pfam	PF05895	NA	DUF859
UHGV-0180251_16	COG	COG4675	Phage tail collar domain	NA
UHGV-0180251_16	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0180251_17	PHROG	phrog_6616	tail protein	tail
UHGV-0180251_17	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0180251_17	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0180251_17	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0180251_18	PHROG	phrog_1194	NA	unknown function
UHGV-0180251_18	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0180251_18	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0180251_18	Pfam	PF20458	NA	DUF6711
UHGV-0180251_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180251_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180251_19	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0180251_19	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0180251_19	COG	COG1511	NA	NA
UHGV-0180251_19	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0180251_20	PHROG	phrog_706	NA	unknown function
UHGV-0180251_20	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0180251_20	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0180251_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180251_20	Structural annotation	PF06854	NA	NA
UHGV-0180251_21	PHROG	phrog_11299	NA	unknown function
UHGV-0180251_21	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0180251_21	Structural annotation	PF10666	NA	NA
UHGV-0180251_22	PHROG	phrog_3099	NA	unknown function
UHGV-0180251_22	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0180251_22	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0180251_23	PHROG	phrog_3266	tail completion	connector
UHGV-0180251_23	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0180251_23	Structural annotation	PF12691	NA	NA
UHGV-0180251_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180251_24	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0180251_24	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0180251_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180251_24	Structural annotation	PF11114	NA	NA
UHGV-0180251_25	PHROG	phrog_3366	NA	unknown function
UHGV-0180251_25	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0180251_25	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0180251_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180251_26	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0180251_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180251_27	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0180251_27	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0180251_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180251_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180251_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180251_27	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180251_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0180251_28	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0180251_29	Structural annotation	PF18152	NA	NA
UHGV-0180251_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180251_30	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0180251_30	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0180251_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180251_30	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0180251_30	COG	COG2369	NA	NA
UHGV-0180251_30	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0180251_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180251_31	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0180251_31	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0180251_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180251_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180251_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180251_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180251_32	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0180251_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0180251_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180251_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180251_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180251_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180251_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180251_33	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0180251_33	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0180251_33	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0180251_33	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0180251_33	Structural annotation	PF16677	NA	NA
UHGV-0180251_34	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0180251_34	Structural annotation	TIGR01636	NA	NA
UHGV-0180251_39	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180251_39	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0180251_39	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0180251_39	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0180251_39	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0180251_40	PHROG	phrog_3136	NA	unknown function
UHGV-0180251_40	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0180251_40	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0180251_40	Pfam	PF04266	ASCH domain	ASCH
UHGV-0180251_40	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0180251_40	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0180251_41	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0180251_42	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0180251_42	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0180251_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180251_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180251_43	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180251_43	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0180251_43	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0180251_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180251_43	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180251_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180251_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180251_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180251_45	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0180251_45	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180251_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180251_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180251_45	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0180251_47	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180251_47	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0180251_47	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0180251_47	Pfam	PF06356	NA	DUF1064
UHGV-0180251_47	Structural annotation	PF06356	NA	NA
UHGV-0180251_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180251_49	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180251_49	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0180251_49	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0180251_49	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0180251_49	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0180251_49	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0180251_50	PHROG	phrog_15768	NA	unknown function
UHGV-0180251_50	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0180251_50	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0180251_50	AcrCatalog	cluster_38323	NA	NA
UHGV-0180251_50	Pfam	PF19808	NA	DUF6291
UHGV-0180251_50	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0180251_50	Structural annotation	PF19808	NA	NA
UHGV-0180251_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180251_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180251_52	UniRef90	UniRef90_A0A350TKS2	Single-stranded DNA-binding protein	NA
UHGV-0180251_52	eggNOG-mapper	1007096.BAGW01000030_gene5	Single-strand binding protein family	NA
UHGV-0180251_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180251_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180251_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180251_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180251_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180251_53	PHROG	phrog_7566	NA	unknown function
UHGV-0180251_53	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0180251_53	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0180251_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180251_54	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0180251_54	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180251_54	Structural annotation	PF05772	NA	NA
UHGV-0180251_55	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180251_55	UniRef90	UniRef90_UPI001D07A468	phage recombination protein Bet	NA
UHGV-0180251_55	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0180251_55	Pfam	PF03837	RecT family	RecT
UHGV-0180251_55	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0180251_55	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0180251_55	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0180251_56	PHROG	phrog_674	NA	unknown function
UHGV-0180251_56	UniRef90	UniRef90_UPI001D085352	NA	NA
UHGV-0180251_56	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-0180251_56	Pfam	PF07083	NA	DUF1351
UHGV-0180251_56	Structural annotation	PF07083	NA	NA
UHGV-0180251_57	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180251_57	UniRef90	UniRef90_UPI001D0928A0	YqaJ viral recombinase family protein	NA
UHGV-0180251_57	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0180251_57	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0180251_57	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0180251_57	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0180251_57	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0180251_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180251_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180251_60	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0180251_60	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180251_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180251_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180251_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180251_63	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0180251_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180251_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180251_63	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0180251_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180251_64	PHROG	phrog_95	integrase	integration and excision
UHGV-0180251_64	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0180251_64	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0180251_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180251_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180251_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180251_64	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0180251_65	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA