UHGV-0180252

Genome information

Genome length 42,975 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180252
vOTU ID	vOTU-069450
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588217
BioSample	SAMN09781730
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.79
Jumbo phage	No

Genome content
Genome length	42,975 bps
GC content	54.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.29%
Average CDS length	642.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180252_2	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-0180252_2	Structural annotation	TIGR03114	NA	NA
UHGV-0180252_3	PADLOC	icity0121	Putative small subunit of type IV - was DinG	CRISPR-CAS
UHGV-0180252_4	PHROG	phrog_22746	NA	unknown function
UHGV-0180252_4	UniRef90	UniRef90_A0A7W0HHB2	CRISPR type IV-associated protein Csf2	NA
UHGV-0180252_4	eggNOG-mapper	1121370.AQUY01000001_gene1002	NA	NA
UHGV-0180252_4	PADLOC	cluster1	Csf2_0_IV	CRISPR-CAS
UHGV-0180252_4	Pfam	PF03787	RAMP superfamily	RAMPs
UHGV-0180252_5	PHROG	phrog_34599	NA	unknown function
UHGV-0180252_5	eggNOG-mapper	446471.Xcel_3394	NA	NA
UHGV-0180252_5	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0180252_5	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-0180252_6	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180252_6	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180252_6	UniRef90	UniRef90_A0A6S6XHM1	PAPS_reduct domain-containing protein	NA
UHGV-0180252_6	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180252_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180252_6	Structural annotation	PF01507, MF_00064, NF006327, COG3969	NA	NA
UHGV-0180252_7	Structural annotation	TIGR01636	NA	NA
UHGV-0180252_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0180252_8	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0180252_8	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0180252_8	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0180252_8	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0180252_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180252_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180252_8	COG	COG0863	DNA modification methylase	NA
UHGV-0180252_8	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0180252_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180252_11	PHROG	phrog_10250	NA	unknown function
UHGV-0180252_11	UniRef90	UniRef90_A0A8J6PA00	PBSX family phage terminase large subunit	NA
UHGV-0180252_11	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0180252_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180252_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180252_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180252_11	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180252_12	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180252_12	UniRef90	UniRef90_A0A417SPJ5	Phage portal protein	NA
UHGV-0180252_12	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0180252_12	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180252_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180252_13	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0180252_13	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0180252_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180252_13	COG	COG2369	NA	NA
UHGV-0180252_13	Structural annotation	PF06152	NA	NA
UHGV-0180252_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0180252_16	UniRef90	UniRef90_A0A3D5I8U9	Phage coat protein	NA
UHGV-0180252_16	eggNOG-mapper	1151292.QEW_4535	NA	NA
UHGV-0180252_16	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0180252_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0180252_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180252_17	eggNOG-mapper	663278.Ethha_0495	NA	NA
UHGV-0180252_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180252_19	UniRef90	UniRef90_UPI00156EFCF3	minor capsid protein	NA
UHGV-0180252_19	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-0180252_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180252_19	Structural annotation	PF11114	NA	NA
UHGV-0180252_20	PHROG	phrog_3266	tail completion	connector
UHGV-0180252_20	Structural annotation	PF12691	NA	NA
UHGV-0180252_21	PHROG	phrog_3099	NA	unknown function
UHGV-0180252_21	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0180252_21	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0180252_22	PHROG	phrog_11299	NA	unknown function
UHGV-0180252_22	Structural annotation	PF10666	NA	NA
UHGV-0180252_23	PHROG	phrog_706	NA	unknown function
UHGV-0180252_23	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0180252_23	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0180252_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180252_23	Structural annotation	PF06854	NA	NA
UHGV-0180252_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180252_24	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0180252_24	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0180252_25	PHROG	phrog_1194	NA	unknown function
UHGV-0180252_25	eggNOG-mapper	257314.LJ_0323	NA	NA
UHGV-0180252_25	Pfam	PF20458	NA	DUF6711
UHGV-0180252_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180252_26	PHROG	phrog_6616	tail protein	tail
UHGV-0180252_26	eggNOG-mapper	1246.JMEA01000006_gene52	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	NA
UHGV-0180252_26	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0180252_27	Structural annotation	PF16640	NA	NA
UHGV-0180252_28	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0180252_30	KOfam	K21470	ycbB; L,D-transpeptidase YcbB	NA
UHGV-0180252_30	PHROG	phrog_1493	endolysin	lysis
UHGV-0180252_30	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0180252_30	eggNOG-mapper	294382.Q5YA51_9CAUD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180252_30	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180252_30	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0180252_31	PHROG	phrog_199	holin	lysis
UHGV-0180252_31	UniRef90	UniRef90_A0A7X7I5M6	Phage holin family protein	NA
UHGV-0180252_31	eggNOG-mapper	986075.CathTA2_0712	Phage-related holin (Lysis protein)	NA
UHGV-0180252_31	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0180252_31	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0180252_31	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0180252_31	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0180252_37	PHROG	phrog_18108	NA	unknown function
UHGV-0180252_37	UniRef90	UniRef90_UPI0004BFFB0D	helix-turn-helix domain-containing protein	NA
UHGV-0180252_37	eggNOG-mapper	196627.cg1967	NA	NA
UHGV-0180252_37	AcrCatalog	cluster_73909	NA	NA
UHGV-0180252_37	Structural annotation	PF07443	NA	NA
UHGV-0180252_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180252_38	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0180252_38	UniRef90	UniRef90_A0A2V2FT63	HTH cro/C1-type domain-containing protein	NA
UHGV-0180252_38	eggNOG-mapper	596330.HMPREF0628_1294	sequence-specific DNA binding	NA
UHGV-0180252_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180252_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180252_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180252_39	KOfam	K14059	int; integrase	NA
UHGV-0180252_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0180252_39	UniRef90	UniRef90_A0A1V5YD17	Transposase	NA
UHGV-0180252_39	eggNOG-mapper	643648.Slip_1975	Belongs to the 'phage' integrase family	NA
UHGV-0180252_39	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180252_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180252_39	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180252_39	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180252_42	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0180252_42	eggNOG-mapper	428125.CLOLEP_00924	NA	NA
UHGV-0180252_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180252_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0180252_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180252_43	UniRef90	UniRef90_A0A658JJ51	XRE family transcriptional regulator	NA
UHGV-0180252_43	eggNOG-mapper	97138.C820_00783	Helix-turn-helix domain	NA
UHGV-0180252_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180252_43	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0180252_46	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0180252_46	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0180252_46	UniRef90	UniRef90_A0A366C3J4	HTH cro/C1-type domain-containing protein	NA
UHGV-0180252_46	eggNOG-mapper	1223542.GM1_022_00460	Helix-turn-helix domain	NA
UHGV-0180252_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0180252_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180252_47	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0180252_50	PHROG	phrog_7792	NA	unknown function
UHGV-0180252_50	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0180252_50	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0180252_51	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0180252_51	UniRef90	UniRef90_A0A841ZPH6	Siphovirus Gp157 family protein	NA
UHGV-0180252_51	eggNOG-mapper	755164.D6PSU0_9CAUD	Siphovirus Gp157	NA
UHGV-0180252_51	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0180252_51	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0180252_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180252_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0180252_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180252_52	Structural annotation	PF05772	NA	NA
UHGV-0180252_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180252_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180252_54	UniRef90	UniRef90_A0A1V5KEV3	Single-stranded DNA-binding protein	NA
UHGV-0180252_54	eggNOG-mapper	1392491.JIAE01000001_gene2290	Single-stranded DNA-binding protein	NA
UHGV-0180252_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180252_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180252_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180252_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180252_54	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0180252_55	eggNOG-mapper	1117943.SFHH103_00423	NA	NA
UHGV-0180252_56	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0180252_56	UniRef90	UniRef90_R6LWZ9	DnaD and phage-associated domain	NA
UHGV-0180252_56	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0180252_56	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0180252_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180252_56	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0180252_57	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0180252_57	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0180252_57	UniRef90	UniRef90_A0A349YQ92	IstB_IS21 domain-containing protein	NA
UHGV-0180252_57	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0180252_57	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0180252_57	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0180252_58	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180252_58	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180252_58	UniRef90	UniRef90_A0A7G9GLS4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180252_58	eggNOG-mapper	264198.Reut_A2384	Endodeoxyribonuclease RusA	NA
UHGV-0180252_58	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0180252_58	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0180252_58	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0180252_59	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0180252_59	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0180252_59	UniRef90	UniRef90_H1CC42	Thymidylate synthase, flavin-dependent	NA
UHGV-0180252_59	eggNOG-mapper	1121405.dsmv_3756	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0180252_59	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0180252_59	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0180252_59	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0180252_59	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0180252_61	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0180252_61	UniRef90	UniRef90_UPI001899D94E	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0180252_61	eggNOG-mapper	1286171.EAL2_c10940	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0180252_61	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0180252_61	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA