UHGV-0180330

Genome information

Genome length 59,245 bps

CDS count 86

Completeness 99.43% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180330
vOTU ID	vOTU-066654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_588027
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.43% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	33
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.08
Jumbo phage	No

Genome content
Genome length	59,245 bps
GC content	46.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	93.10%
Average CDS length	644.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180330_1	PHROG	phrog_4303	NA	unknown function
UHGV-0180330_1	UniRef90	UniRef90_D4P7L8	Gp107	NA
UHGV-0180330_1	eggNOG-mapper	691965.D4P7L8_9CAUD	NA	NA
UHGV-0180330_2	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180330_2	UniRef90	UniRef90_A0A523T214	Helix-turn-helix domain-containing protein	NA
UHGV-0180330_2	eggNOG-mapper	428125.CLOLEP_01400	Bacterial regulatory proteins, luxR family	NA
UHGV-0180330_2	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0180330_2	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0180330_2	Structural annotation	PF05183	NA	NA
UHGV-0180330_3	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180330_3	UniRef90	UniRef90_UPI001D06A0CE	NA	NA
UHGV-0180330_3	eggNOG-mapper	742733.HMPREF9469_05040	NA	NA
UHGV-0180330_3	Pfam	PF10926	NA	DUF2800
UHGV-0180330_3	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0180330_4	UniRef90	UniRef90_A0A140G723	Holliday junction resolvase	NA
UHGV-0180330_4	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0180330_4	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0180330_5	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180330_5	UniRef90	UniRef90_A0A374JNH7	Helicase ATP-binding domain-containing protein	NA
UHGV-0180330_5	eggNOG-mapper	742733.HMPREF9469_05062	Helicase conserved C-terminal domain	NA
UHGV-0180330_5	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0180330_5	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0180330_6	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180330_6	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-0180330_6	eggNOG-mapper	742733.HMPREF9469_05065	NA	NA
UHGV-0180330_6	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0180330_7	PHROG	phrog_236	nucleotide kinase	other
UHGV-0180330_7	UniRef90	UniRef90_A0A418MBD6	NA	NA
UHGV-0180330_7	eggNOG-mapper	673376.F2VHW0_9CAUD	NA	NA
UHGV-0180330_7	Pfam	PF11753	NA	DUF3310
UHGV-0180330_8	PHROG	phrog_19852	NA	unknown function
UHGV-0180330_8	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0180330_9	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180330_9	UniRef90	UniRef90_G9RWJ6	SF3 helicase domain-containing protein	NA
UHGV-0180330_9	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0180330_9	Pfam	PF19263	NA	DUF5906
UHGV-0180330_9	Structural annotation	PF00136, PF05272, PF10991, PF09250, MF_04100, MF_00016, NF011296, TIGR00592, COG3378, COG0417	NA	NA
UHGV-0180330_12	PHROG	phrog_4678	NA	unknown function
UHGV-0180330_12	UniRef90	UniRef90_D4P7T9	Gp071	NA
UHGV-0180330_12	eggNOG-mapper	478749.BRYFOR_08561	NA	NA
UHGV-0180330_14	PHROG	phrog_2152	NA	unknown function
UHGV-0180330_14	UniRef90	UniRef90_UPI00157010A4	NA	NA
UHGV-0180330_14	eggNOG-mapper	478749.BRYFOR_08565	NA	NA
UHGV-0180330_14	Pfam	PF19880	NA	DUF6353
UHGV-0180330_14	Structural annotation	PF19880	NA	NA
UHGV-0180330_15	PHROG	phrog_4079	NA	unknown function
UHGV-0180330_15	UniRef90	UniRef90_D4P7H8	Gp067	NA
UHGV-0180330_15	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-0180330_20	PHROG	phrog_2152	NA	unknown function
UHGV-0180330_20	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0180330_20	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0180330_20	Pfam	PF19880	NA	DUF6353
UHGV-0180330_20	Structural annotation	PF19880	NA	NA
UHGV-0180330_21	PHROG	phrog_2152	NA	unknown function
UHGV-0180330_21	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-0180330_21	Pfam	PF19880	NA	DUF6353
UHGV-0180330_22	PHROG	phrog_2152	NA	unknown function
UHGV-0180330_22	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-0180330_22	Pfam	PF19880	NA	DUF6353
UHGV-0180330_22	Structural annotation	PF19880	NA	NA
UHGV-0180330_24	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0180330_24	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0180330_24	UniRef90	UniRef90_A0A3D5I9K5	dCTP deaminase	NA
UHGV-0180330_24	eggNOG-mapper	742735.HMPREF9467_04051	Belongs to the dCTP deaminase family	NA
UHGV-0180330_24	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0180330_24	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0180330_24	COG	COG0717	dCTP deaminase	NA
UHGV-0180330_24	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0180330_25	PHROG	phrog_6721	NA	unknown function
UHGV-0180330_25	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0180330_25	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0180330_31	Structural annotation	PF18892	NA	NA
UHGV-0180330_34	Structural annotation	MF_01387	NA	NA
UHGV-0180330_46	Structural annotation	PF10743, TIGR01764, COG3311	NA	NA
UHGV-0180330_48	PHROG	phrog_32444	NA	unknown function
UHGV-0180330_49	PHROG	phrog_37604	NA	unknown function
UHGV-0180330_49	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-0180330_50	KOfam	K14059	int; integrase	NA
UHGV-0180330_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0180330_50	UniRef90	UniRef90_A0A1Y3SS19	Tyr recombinase domain-containing protein	NA
UHGV-0180330_50	eggNOG-mapper	1121335.Clst_0367	Belongs to the 'phage' integrase family	NA
UHGV-0180330_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180330_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180330_50	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0180330_51	PHROG	phrog_1233	NA	unknown function
UHGV-0180330_51	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0180330_53	PHROG	phrog_20016	NA	unknown function
UHGV-0180330_53	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0180330_54	PHROG	phrog_16490	NA	unknown function
UHGV-0180330_54	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0180330_56	PHROG	phrog_881	holin	lysis
UHGV-0180330_56	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0180330_56	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0180330_56	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0180330_56	Structural annotation	PF16938	NA	NA
UHGV-0180330_57	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0180330_58	PHROG	phrog_1493	endolysin	lysis
UHGV-0180330_58	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0180330_58	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0180330_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180330_58	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0180330_58	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0180330_59	KOfam	K16698	tuaG; teichuronic acid biosynthesis glycosyltransferase TuaG [EC:2.4.-.-]	NA
UHGV-0180330_59	UniRef90	UniRef90_R6Y1N2	Cell-wall biogenesis glycosyltransferase	NA
UHGV-0180330_59	eggNOG-mapper	1541065.JRFE01000026_gene2107	Glycosyl transferase, family 2	NA
UHGV-0180330_59	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0180330_59	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0180330_62	Structural annotation	PF16640	NA	NA
UHGV-0180330_63	PHROG	phrog_372	tail protein	tail
UHGV-0180330_63	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0180330_63	eggNOG-mapper	877414.ATWA01000019_gene2053	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0180330_63	Pfam	PF05895	NA	DUF859
UHGV-0180330_63	COG	COG4675	Phage tail collar domain	NA
UHGV-0180330_64	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180330_64	eggNOG-mapper	195103.CPF_1574	Prophage endopeptidase tail	NA
UHGV-0180330_64	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180330_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180330_64	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0180330_64	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180330_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180330_65	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-0180330_65	eggNOG-mapper	1443125.Z962_05590	phage tail	NA
UHGV-0180330_65	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180330_65	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180330_68	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-0180330_69	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-0180330_70	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0180330_70	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-0180330_70	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180330_70	COG	COG5412	Phage-related protein	NA
UHGV-0180330_71	UniRef90	UniRef90_A0A7X5IVV8	HK97 gp10 family phage protein	NA
UHGV-0180330_71	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0180330_71	Structural annotation	TIGR01725	NA	NA
UHGV-0180330_72	PHROG	phrog_4338	NA	unknown function
UHGV-0180330_72	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0180330_73	PHROG	phrog_4282	NA	unknown function
UHGV-0180330_73	eggNOG-mapper	428125.CLOLEP_01416	NA	NA
UHGV-0180330_74	PHROG	phrog_2645	major tail protein	tail
UHGV-0180330_74	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-0180330_74	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0180330_74	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0180330_75	PHROG	phrog_78	tail terminator	connector
UHGV-0180330_75	UniRef90	UniRef90_A0A5J6D7U9	Tail terminator	NA
UHGV-0180330_75	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0180330_75	Structural annotation	PF20765	NA	NA
UHGV-0180330_76	PHROG	phrog_4270	NA	unknown function
UHGV-0180330_76	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-0180330_76	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180330_78	KOfam	K06904	NA	NA
UHGV-0180330_78	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0180330_78	UniRef90	UniRef90_A0A1Y4MXD5	Phage major capsid protein	NA
UHGV-0180330_78	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0180330_78	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0180330_78	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0180330_79	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180330_79	UniRef90	UniRef90_UPI001D05DA00	phage portal protein	NA
UHGV-0180330_79	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0180330_79	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180330_79	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180330_81	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180330_81	UniRef90	UniRef90_A0A550GX82	Terminase	NA
UHGV-0180330_81	eggNOG-mapper	428125.CLOLEP_01409	Phage Terminase	NA
UHGV-0180330_81	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180330_81	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180330_81	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180330_81	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180330_82	PHROG	phrog_7021	NA	unknown function
UHGV-0180330_82	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0180330_83	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0180330_83	UniRef90	UniRef90_D4P7C3	Structural protein	NA
UHGV-0180330_83	eggNOG-mapper	691965.D4P7C3_9CAUD	NA	NA
UHGV-0180330_84	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180330_84	UniRef90	UniRef90_A0A4D6E4M9	HNH endonuclease	NA
UHGV-0180330_84	eggNOG-mapper	691965.D4P7C0_9CAUD	NA	NA
UHGV-0180330_85	PHROG	phrog_4259	NA	unknown function
UHGV-0180330_85	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0180330_85	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA