UHGV-0180372

Genome information

Genome length 27,387 bps

CDS count 41

Completeness 60.80% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180372
vOTU ID	vOTU-029150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592009
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.99
Jumbo phage	No

Genome content
Genome length	27,387 bps
GC content	42.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.06%
Average CDS length	620.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180372_1	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0180372_1	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0180372_1	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0180372_1	Pfam	PF06048	NA	DUF927
UHGV-0180372_1	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0180372_1	COG	COG5519	NA	NA
UHGV-0180372_1	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0180372_2	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0180372_2	PHROG	phrog_11992	NA	unknown function
UHGV-0180372_2	UniRef90	UniRef90_A0A412EM56	DNA primase	NA
UHGV-0180372_2	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0180372_2	PADLOC	drt-cluster192	DRT	DRT
UHGV-0180372_2	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0180372_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0180372_2	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0180372_3	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0180372_3	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0180372_3	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0180372_3	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0180372_3	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0180372_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180372_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180372_4	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0180372_4	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0180372_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180372_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180372_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180372_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180372_4	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0180372_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180372_5	UniRef90	UniRef90_A0A0F0CNS6	ERF superfamily protein	NA
UHGV-0180372_5	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0180372_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0180372_5	Structural annotation	PF04404, TIGR00607, COG1978	NA	NA
UHGV-0180372_6	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0180372_8	Structural annotation	NF011879	NA	NA
UHGV-0180372_12	AcrCatalog	cluster_17974	NA	NA
UHGV-0180372_14	PHROG	phrog_6058	NA	unknown function
UHGV-0180372_14	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0180372_14	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0180372_15	Structural annotation	COG1321	NA	NA
UHGV-0180372_16	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0180372_16	Structural annotation	PF10544	NA	NA
UHGV-0180372_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180372_17	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0180372_17	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180372_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0180372_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180372_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180372_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180372_18	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0180372_18	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0180372_18	eggNOG-mapper	1497679.EP56_05520	Helix-turn-helix	NA
UHGV-0180372_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180372_18	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0180372_18	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0180372_21	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0180372_21	PHROG	phrog_8810	NA	unknown function
UHGV-0180372_21	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0180372_21	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0180372_21	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0180372_21	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0180372_21	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0180372_21	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0180372_22	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0180372_22	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0180372_22	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0180372_22	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0180372_22	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0180372_23	KOfam	K14059	int; integrase	NA
UHGV-0180372_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0180372_23	UniRef90	UniRef90_D4LPN8	Phage integrase family	NA
UHGV-0180372_23	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0180372_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180372_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180372_23	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0180372_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0180372_24	PHROG	phrog_6745	endolysin	lysis
UHGV-0180372_24	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0180372_24	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0180372_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180372_24	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180372_24	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0180372_24	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0180372_25	PHROG	phrog_6616	tail protein	tail
UHGV-0180372_25	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0180372_25	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0180372_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180372_25	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0180372_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180372_27	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180372_27	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0180372_27	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0180372_27	COG	COG1511	NA	NA
UHGV-0180372_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180372_28	PHROG	phrog_706	NA	unknown function
UHGV-0180372_28	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0180372_28	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0180372_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180372_28	Structural annotation	PF06854	NA	NA
UHGV-0180372_29	PHROG	phrog_11299	NA	unknown function
UHGV-0180372_29	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0180372_29	Structural annotation	PF10666	NA	NA
UHGV-0180372_30	PHROG	phrog_3099	NA	unknown function
UHGV-0180372_30	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0180372_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180372_31	PHROG	phrog_3266	tail completion	connector
UHGV-0180372_31	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0180372_31	Structural annotation	PF12691	NA	NA
UHGV-0180372_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180372_32	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0180372_32	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0180372_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180372_32	Structural annotation	PF11114	NA	NA
UHGV-0180372_33	PHROG	phrog_3366	NA	unknown function
UHGV-0180372_33	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0180372_33	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0180372_34	PHROG	phrog_1129	holin	lysis
UHGV-0180372_34	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0180372_34	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0180372_34	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180372_34	Structural annotation	PF06946	NA	NA
UHGV-0180372_35	PHROG	phrog_1233	NA	unknown function
UHGV-0180372_35	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0180372_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180372_36	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0180372_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0180372_37	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0180372_37	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0180372_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0180372_37	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180372_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180372_38	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0180372_38	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0180372_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180372_38	Structural annotation	PF06810	NA	NA
UHGV-0180372_39	PHROG	phrog_28802	NA	unknown function
UHGV-0180372_39	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0180372_40	PHROG	phrog_20016	NA	unknown function
UHGV-0180372_40	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0180372_40	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0180372_40	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180372_41	PHROG	phrog_16490	NA	unknown function
UHGV-0180372_41	eggNOG-mapper	445972.ANACOL_01880	NA	NA