UHGV-0180396

Genome information

Genome length 44,700 bps

CDS count 69

Completeness 99.90% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180396
vOTU ID	vOTU-011033
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579603
BioSample	SAMN09781740
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.29
Jumbo phage	No

Genome content
Genome length	44,700 bps
GC content	49.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.43%
Average CDS length	582.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180396_2	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-0180396_5	PHROG	phrog_3136	NA	unknown function
UHGV-0180396_5	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0180396_5	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0180396_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0180396_5	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0180396_7	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0180396_7	UniRef90	UniRef90_A0A2V2F8D8	Adenine methyltransferase	NA
UHGV-0180396_7	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0180396_7	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0180396_7	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0180396_7	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0180396_10	PHROG	phrog_9804	NA	unknown function
UHGV-0180396_10	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0180396_10	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0180396_10	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0180396_10	Structural annotation	PF11417	NA	NA
UHGV-0180396_11	PHROG	phrog_15768	NA	unknown function
UHGV-0180396_11	UniRef90	UniRef90_A0A4D7AS84	NA	NA
UHGV-0180396_11	eggNOG-mapper	1123489.AUAN01000006_gene1691	Protein conserved in bacteria	NA
UHGV-0180396_11	AcrCatalog	cluster_38323	NA	NA
UHGV-0180396_11	Pfam	PF19808	NA	DUF6291
UHGV-0180396_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180396_11	Structural annotation	PF19808	NA	NA
UHGV-0180396_12	PHROG	phrog_4973	NA	unknown function
UHGV-0180396_12	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0180396_12	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0180396_12	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0180396_12	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0180396_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180396_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180396_13	UniRef90	UniRef90_A0A7C6XX43	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180396_13	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0180396_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0180396_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0180396_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0180396_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180396_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180396_14	UniRef90	UniRef90_A0A3D2HZK1	Single-stranded DNA-binding protein	NA
UHGV-0180396_14	eggNOG-mapper	445972.ANACOL_00151	Single-stranded DNA-binding protein	NA
UHGV-0180396_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180396_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180396_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180396_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180396_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180396_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0180396_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180396_15	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0180396_15	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0180396_15	Pfam	PF03837	RecT family	RecT
UHGV-0180396_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0180396_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0180396_15	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0180396_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180396_16	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0180396_16	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0180396_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0180396_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0180396_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0180396_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0180396_20	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0180396_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180396_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180396_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180396_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180396_23	UniRef90	UniRef90_UPI000B35D4B7	helix-turn-helix transcriptional regulator	NA
UHGV-0180396_23	eggNOG-mapper	1160721.RBI_I00363	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180396_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180396_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180396_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180396_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0180396_25	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0180396_25	eggNOG-mapper	663278.Ethha_0939	NA	NA
UHGV-0180396_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180396_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180396_25	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180396_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180396_25	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0180396_29	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0180396_30	PHROG	phrog_10091	holin	lysis
UHGV-0180396_30	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0180396_30	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0180396_30	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0180396_30	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0180396_30	COG	COG5546	NA	NA
UHGV-0180396_30	Structural annotation	COG5546	NA	NA
UHGV-0180396_31	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0180396_31	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0180396_31	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0180396_31	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0180396_32	PHROG	phrog_4105	NA	unknown function
UHGV-0180396_32	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0180396_32	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0180396_33	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0180396_33	PHROG	phrog_2649	endolysin	lysis
UHGV-0180396_33	UniRef90	UniRef90_R5EEL2	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0180396_33	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0180396_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180396_33	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0180396_33	COG	COG3108	NA	NA
UHGV-0180396_33	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0180396_34	eggNOG-mapper	304371.MCP_2545	Repeats in polycystic kidney disease 1 (PKD1) and other proteins	NA
UHGV-0180396_37	PHROG	phrog_6616	tail protein	tail
UHGV-0180396_37	eggNOG-mapper	1507.HMPREF0262_00217	NA	NA
UHGV-0180396_38	PHROG	phrog_1194	NA	unknown function
UHGV-0180396_38	eggNOG-mapper	1507.HMPREF0262_01188	NA	NA
UHGV-0180396_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180396_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180396_39	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0180396_39	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0180396_40	eggNOG-mapper	469596.HMPREF9488_01312	NA	NA
UHGV-0180396_41	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0180396_41	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0180396_41	Pfam	PF16478	NA	DUF5055
UHGV-0180396_41	Structural annotation	PF16478	NA	NA
UHGV-0180396_42	PHROG	phrog_158	major tail protein	tail
UHGV-0180396_42	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0180396_42	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0180396_42	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0180396_43	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0180396_44	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0180396_44	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0180396_45	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0180396_46	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0180396_46	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0180396_46	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0180396_46	Structural annotation	TIGR01560	NA	NA
UHGV-0180396_47	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0180396_47	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0180396_47	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0180396_47	Pfam	PF17236	NA	DUF5309
UHGV-0180396_47	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0180396_49	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0180396_49	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0180396_49	eggNOG-mapper	324057.Pjdr2_1537	NA	NA
UHGV-0180396_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180396_50	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0180396_50	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180396_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180396_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180396_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180396_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0180396_52	UniRef90	UniRef90_D9SWH3	Prophage antirepressor	NA
UHGV-0180396_52	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0180396_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180396_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180396_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0180396_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0180396_53	UniRef90	UniRef90_A0A845R620	CopG family transcriptional regulator	NA
UHGV-0180396_53	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0180396_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0180396_54	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0180396_54	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0180396_54	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0180396_54	COG	COG5410	NA	NA
UHGV-0180396_54	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0180396_58	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0180396_58	Structural annotation	TIGR03826	NA	NA
UHGV-0180396_59	Structural annotation	PF19818, TIGR03931	NA	NA
UHGV-0180396_60	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0180396_60	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0180396_69	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0180396_69	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0180396_69	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0180396_69	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0180396_69	Structural annotation	PF16677	NA	NA