UHGV-0180397

Genome information

vOTU vOTU-019783

Genome length 34,128 bps

CDS count 51

Completeness 83.78% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180397
vOTU ID	vOTU-019783
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579600
BioSample	SAMN09781740
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.23
Jumbo phage	No

Genome content
Genome length	34,128 bps
GC content	47.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.49%
Average CDS length	634.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180397_2	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0180397_3	PHROG	phrog_21498	NA	unknown function
UHGV-0180397_3	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0180397_3	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0180397_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180397_3	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0180397_4	eggNOG-mapper	411459.RUMOBE_01712	NA	NA
UHGV-0180397_4	Structural annotation	PF19087, NF033202	NA	NA
UHGV-0180397_5	PHROG	phrog_14030	NA	unknown function
UHGV-0180397_5	UniRef90	UniRef90_R5BP16	SH3b domain-containing protein	NA
UHGV-0180397_5	eggNOG-mapper	1095750.HMPREF9970_0318	Putative cell wall binding repeat	NA
UHGV-0180397_5	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0180397_8	eggNOG-mapper	1280671.AUJH01000012_gene3135	NA	NA
UHGV-0180397_9	PHROG	phrog_1863	NA	unknown function
UHGV-0180397_9	UniRef90	UniRef90_A0A7W3SWZ2	Peptidoglycan hydrolase CwlO-like protein	NA
UHGV-0180397_9	eggNOG-mapper	742741.HMPREF9475_00442	NA	NA
UHGV-0180397_10	UniRef90	UniRef90_A0A417QX67	XkdX family protein	NA
UHGV-0180397_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0180397_10	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0180397_11	PHROG	phrog_20201	NA	unknown function
UHGV-0180397_12	PHROG	phrog_5302	tail protein	tail
UHGV-0180397_12	UniRef90	UniRef90_A0A4R1ANY5	Fibronectin type-III domain-containing protein	NA
UHGV-0180397_12	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0180397_12	Structural annotation	COG1262	NA	NA
UHGV-0180397_13	PHROG	phrog_38006	NA	unknown function
UHGV-0180397_13	eggNOG-mapper	742741.HMPREF9475_00437	NA	NA
UHGV-0180397_14	PHROG	phrog_31398	NA	unknown function
UHGV-0180397_14	UniRef90	UniRef90_A0A417VHC6	NA	NA
UHGV-0180397_14	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0180397_14	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0180397_14	Structural annotation	PF10651, NF033814, COG2372	NA	NA
UHGV-0180397_15	PHROG	phrog_18110	NA	unknown function
UHGV-0180397_15	UniRef90	UniRef90_UPI001D08457A	phage tail protein	NA
UHGV-0180397_15	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0180397_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180397_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180397_15	COG	COG4926	Phage-related protein	NA
UHGV-0180397_15	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0180397_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180397_16	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0180397_16	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0180397_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180397_16	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0180397_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0180397_17	UniRef90	UniRef90_A0A3R6TZG0	Phage tail tape measure protein	NA
UHGV-0180397_17	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0180397_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0180397_17	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0180397_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0180397_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0180397_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0180397_18	PHROG	phrog_25901	NA	unknown function
UHGV-0180397_18	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0180397_19	PHROG	phrog_13494	NA	unknown function
UHGV-0180397_19	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-0180397_19	Structural annotation	PF16462	NA	NA
UHGV-0180397_20	PHROG	phrog_88	major tail protein	tail
UHGV-0180397_20	UniRef90	UniRef90_A0A417VGN7	Major tail protein	NA
UHGV-0180397_20	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0180397_20	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0180397_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180397_20	COG	COG5492	NA	NA
UHGV-0180397_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0180397_21	PHROG	phrog_78	tail terminator	connector
UHGV-0180397_21	UniRef90	UniRef90_I2E8V8	Gp10	NA
UHGV-0180397_21	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0180397_21	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0180397_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180397_22	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0180397_22	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0180397_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0180397_22	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0180397_23	UniRef90	UniRef90_A0A417VGC6	Phage head-tail adapter protein	NA
UHGV-0180397_23	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0180397_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0180397_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0180397_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180397_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0180397_24	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0180397_24	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0180397_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0180397_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0180397_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0180397_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180397_25	UniRef90	UniRef90_A0A3R6YBY5	Phage major capsid protein	NA
UHGV-0180397_25	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180397_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180397_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180397_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180397_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180397_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0180397_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0180397_26	UniRef90	UniRef90_A0A417VFW3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0180397_26	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0180397_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0180397_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0180397_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0180397_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180397_27	UniRef90	UniRef90_A0A3R6XLQ1	Phage portal protein	NA
UHGV-0180397_27	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0180397_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180397_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0180397_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180397_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180397_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180397_28	UniRef90	UniRef90_A0A417VH15	Terminase large subunit	NA
UHGV-0180397_28	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0180397_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180397_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180397_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180397_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180397_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0180397_29	UniRef90	UniRef90_A0A417VG35	Phage terminase small subunit P27 family	NA
UHGV-0180397_29	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0180397_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0180397_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0180397_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0180397_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0180397_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180397_30	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0180397_30	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0180397_30	Structural annotation	PF05766	NA	NA
UHGV-0180397_31	PHROG	phrog_1558	NA	unknown function
UHGV-0180397_31	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-0180397_31	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0180397_31	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0180397_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180397_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180397_33	UniRef90	UniRef90_A0A417QWS3	Single-stranded DNA-binding protein	NA
UHGV-0180397_33	eggNOG-mapper	140626.JHWB01000009_gene1110	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180397_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180397_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180397_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180397_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180397_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0180397_35	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0180397_35	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0180397_35	UniRef90	UniRef90_A0A417QWX3	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0180397_35	eggNOG-mapper	411470.RUMGNA_00216	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0180397_35	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0180397_35	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0180397_35	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0180397_36	PHROG	phrog_1315	NA	unknown function
UHGV-0180397_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0180397_37	PHROG	phrog_15982	NA	unknown function
UHGV-0180397_37	UniRef90	UniRef90_A0A417VH73	ParB domain-containing protein	NA
UHGV-0180397_37	eggNOG-mapper	1232453.BAIF02000028_gene2716	ParB-like nuclease domain	NA
UHGV-0180397_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180397_37	Pfam	PF12961	NA	DUF3850
UHGV-0180397_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180397_37	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0180397_38	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0180397_39	KOfam	K00957	cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]	NA
UHGV-0180397_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180397_39	UniRef90	UniRef90_UPI001C01C809	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0180397_39	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180397_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180397_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180397_39	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0180397_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0180397_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0180397_40	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0180397_40	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0180397_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0180397_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0180397_40	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0180397_41	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0180397_42	PHROG	phrog_824	NA	unknown function
UHGV-0180397_42	UniRef90	UniRef90_A0A417QX87	VRR-NUC domain-containing protein	NA
UHGV-0180397_42	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0180397_42	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0180397_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180397_45	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0180397_45	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0180397_45	Structural annotation	PF21578	NA	NA
UHGV-0180397_48	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0180397_48	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0180397_48	UniRef90	UniRef90_A0A374UQ73	Methyltransferase	NA
UHGV-0180397_48	eggNOG-mapper	1335760.ASTG01000033_gene36	N-4 methylation of cytosine	NA
UHGV-0180397_48	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0180397_48	Pfam	PF01170	Putative RNA methylase family UPF0020	UPF0020
UHGV-0180397_48	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180397_48	COG	COG0863	DNA modification methylase	NA
UHGV-0180397_48	Structural annotation	PF01555, NF010253, COG0863	NA	NA