UHGV-0180398

Genome information

Genome length 26,242 bps

CDS count 34

Completeness 60.39% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180398
vOTU ID	vOTU-029151
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579600
BioSample	SAMN09781740
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.28
Jumbo phage	No

Genome content
Genome length	26,242 bps
GC content	46.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	91.93%
Average CDS length	711.62 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180398_1	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0180398_1	PHROG	phrog_2649	endolysin	lysis
UHGV-0180398_1	UniRef90	UniRef90_A0A3R6AVG7	M15 family peptidase	NA
UHGV-0180398_1	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0180398_1	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0180398_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180398_1	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0180398_1	Structural annotation	PF02557, PF18342, MF_01924, NF007557, COG4991, COG2173	NA	NA
UHGV-0180398_2	PHROG	phrog_443	holin	lysis
UHGV-0180398_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0180398_2	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0180398_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0180398_2	Structural annotation	PF16945	NA	NA
UHGV-0180398_3	PHROG	phrog_1863	NA	unknown function
UHGV-0180398_3	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0180398_4	PHROG	phrog_17196	kinase	other
UHGV-0180398_4	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0180398_4	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0180398_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180398_4	Structural annotation	PF13619	NA	NA
UHGV-0180398_6	PHROG	phrog_18190	NA	unknown function
UHGV-0180398_6	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0180398_6	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0180398_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180398_6	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0180398_7	PHROG	phrog_1194	NA	unknown function
UHGV-0180398_7	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0180398_7	Pfam	PF20458	NA	DUF6711
UHGV-0180398_7	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0180398_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180398_8	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0180398_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180398_8	Structural annotation	PF11177, PF09486, TIGR02559, COG3237, COG1842	NA	NA
UHGV-0180398_9	PHROG	phrog_706	NA	unknown function
UHGV-0180398_9	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0180398_9	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0180398_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180398_9	Structural annotation	PF06854	NA	NA
UHGV-0180398_10	PHROG	phrog_11299	NA	unknown function
UHGV-0180398_10	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0180398_10	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0180398_10	Pfam	PF20378	NA	DUF6673
UHGV-0180398_10	Structural annotation	PF10666	NA	NA
UHGV-0180398_11	PHROG	phrog_3099	NA	unknown function
UHGV-0180398_11	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0180398_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180398_12	PHROG	phrog_3266	tail completion	connector
UHGV-0180398_12	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0180398_12	Structural annotation	PF12691	NA	NA
UHGV-0180398_13	PHROG	phrog_3366	NA	unknown function
UHGV-0180398_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0180398_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0180398_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180398_15	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0180398_16	PHROG	phrog_283	major head protein	head and packaging
UHGV-0180398_16	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0180398_16	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0180398_16	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0180398_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180398_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180398_17	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0180398_17	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0180398_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180398_18	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0180398_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180398_19	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0180398_19	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0180398_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180398_19	COG	COG2369	NA	NA
UHGV-0180398_19	Structural annotation	PF06152	NA	NA
UHGV-0180398_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180398_20	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0180398_20	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0180398_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180398_20	Structural annotation	PF11114	NA	NA
UHGV-0180398_22	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180398_22	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0180398_22	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0180398_22	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180398_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180398_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0180398_23	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0180398_23	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0180398_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180398_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180398_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180398_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180398_24	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0180398_24	UniRef90	UniRef90_UPI001C02085D	phage terminase small subunit-related protein	NA
UHGV-0180398_24	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0180398_24	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0180398_24	COG	COG5484	NA	NA
UHGV-0180398_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0180398_25	PHROG	phrog_9479	NA	unknown function
UHGV-0180398_25	Structural annotation	PF15529	NA	NA
UHGV-0180398_26	PHROG	phrog_8680	NA	unknown function
UHGV-0180398_26	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0180398_26	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0180398_26	Pfam	PF14386	NA	DUF4417
UHGV-0180398_26	Structural annotation	PF14386	NA	NA
UHGV-0180398_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180398_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180398_29	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180398_29	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0180398_29	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0180398_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180398_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180398_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0180398_31	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0180398_32	PHROG	phrog_13489	NA	unknown function
UHGV-0180398_33	PHROG	phrog_874	NA	unknown function
UHGV-0180398_33	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0180398_33	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0180398_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA