UHGV-0180399

Genome information

vOTU vOTU-019784

Genome length 51,682 bps

CDS count 59

Completeness 88.49% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180399
vOTU ID	vOTU-019784
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_579601
BioSample	SAMN09781740
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.2
Jumbo phage	No

Genome content
Genome length	51,682 bps
GC content	44.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	94.50%
Average CDS length	830.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180399_1	PHROG	phrog_21718	NA	unknown function
UHGV-0180399_2	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0180399_3	PHROG	phrog_16490	NA	unknown function
UHGV-0180399_3	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0180399_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180399_5	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0180399_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180399_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0180399_6	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0180399_6	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0180399_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180399_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180399_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180399_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180399_6	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0180399_7	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0180399_7	PHROG	phrog_17577	restriction endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180399_7	UniRef90	UniRef90_A0A2V2ZQP8	Restriction system protein	NA
UHGV-0180399_7	eggNOG-mapper	1196322.A370_02472	Restriction endonuclease	NA
UHGV-0180399_7	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0180399_7	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0180399_7	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0180399_9	UniRef90	UniRef90_A0A1M6KQH6	Helix-turn-helix	NA
UHGV-0180399_9	eggNOG-mapper	1027292.HMPREF9372_3406	Helix-turn-helix	NA
UHGV-0180399_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180399_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180399_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180399_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0180399_10	UniRef90	UniRef90_A0A1X1KP04	HTH cro/C1-type domain-containing protein	NA
UHGV-0180399_10	eggNOG-mapper	717605.Theco_0932	Helix-turn-helix	NA
UHGV-0180399_10	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0180399_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180399_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180399_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180399_15	PHROG	phrog_14367	NA	unknown function
UHGV-0180399_15	UniRef90	UniRef90_A0A3N5LBU6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0180399_15	eggNOG-mapper	1121934.AUDX01000014_gene1571	Lysin motif	NA
UHGV-0180399_15	Pfam	PF01476	LysM domain	LysM
UHGV-0180399_15	COG	COG1388	LysM repeat	NA
UHGV-0180399_15	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0180399_18	PHROG	phrog_1366	NA	unknown function
UHGV-0180399_18	UniRef90	UniRef90_UPI001EDFC883	ATP-binding protein	NA
UHGV-0180399_18	eggNOG-mapper	555779.Dthio_PD3616	SMART AAA ATPase	NA
UHGV-0180399_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-0180399_18	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0180399_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0180399_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180399_19	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180399_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0180399_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180399_20	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0180399_20	eggNOG-mapper	742741.HMPREF9475_03963	NA	NA
UHGV-0180399_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180399_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180399_20	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0180399_21	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0180399_21	eggNOG-mapper	1280706.AUJE01000046_gene1152	NA	NA
UHGV-0180399_21	Structural annotation	PF11417	NA	NA
UHGV-0180399_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180399_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180399_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180399_23	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0180399_23	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0180399_28	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0180399_29	PHROG	phrog_2776	NA	unknown function
UHGV-0180399_29	UniRef90	UniRef90_UPI001899258E	MmcB family DNA repair protein	NA
UHGV-0180399_29	Pfam	PF06319	DNA repair protein MmcB-like	MmcB-like
UHGV-0180399_29	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0180399_30	Structural annotation	PF21098	NA	NA
UHGV-0180399_34	Structural annotation	PF16857, MF_00273, NF001981, COG2157	NA	NA
UHGV-0180399_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180399_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180399_36	UniRef90	UniRef90_R6WK64	Single-stranded DNA-binding protein	NA
UHGV-0180399_36	eggNOG-mapper	626939.HMPREF9443_01150	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180399_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180399_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180399_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180399_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180399_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0180399_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180399_37	UniRef90	UniRef90_UPI0018C4B0C5	NA	NA
UHGV-0180399_37	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0180399_37	Pfam	PF06356	NA	DUF1064
UHGV-0180399_37	Structural annotation	PF06356	NA	NA
UHGV-0180399_38	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0180399_38	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0180399_39	eggNOG-mapper	1280689.AUJC01000003_gene960	NA	NA
UHGV-0180399_40	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180399_40	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0180399_40	UniRef90	UniRef90_UPI000833FD0A	terminase small subunit	NA
UHGV-0180399_40	eggNOG-mapper	1391647.AVSV01000003_gene1801	Terminase small subunit	NA
UHGV-0180399_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180399_40	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0180399_40	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0180399_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180399_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180399_41	UniRef90	UniRef90_A0A316S7L1	PBSX family phage terminase large subunit	NA
UHGV-0180399_41	eggNOG-mapper	1009370.ALO_12436	Phage terminase, large subunit	NA
UHGV-0180399_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180399_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180399_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180399_41	Structural annotation	PF04466, PF20454, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180399_42	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0180399_42	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0180399_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180399_43	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-0180399_43	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-0180399_43	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0180399_43	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0180399_46	PHROG	phrog_334	major head protein	head and packaging
UHGV-0180399_46	UniRef90	UniRef90_A0A316SB53	N4-gp56 family major capsid protein	NA
UHGV-0180399_46	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-0180399_46	Pfam	PF13252	NA	DUF4043
UHGV-0180399_46	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0180399_46	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180399_47	PHROG	phrog_399	structural protein	head and packaging
UHGV-0180399_47	Pfam	PF20387	NA	DUF6682
UHGV-0180399_47	Structural annotation	PF20387	NA	NA
UHGV-0180399_48	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0180399_48	UniRef90	UniRef90_A0A1G6NQU3	Flagellin FlgL	NA
UHGV-0180399_48	eggNOG-mapper	1111454.HMPREF1250_0263	cellulase activity	NA
UHGV-0180399_48	COG	COG1511	NA	NA
UHGV-0180399_49	PHROG	phrog_2427	NA	unknown function
UHGV-0180399_51	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0180399_51	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0180399_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0180399_51	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0180399_51	Structural annotation	PF10651	NA	NA
UHGV-0180399_52	Structural annotation	PF16116	NA	NA
UHGV-0180399_53	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0180399_53	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0180399_53	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0180399_53	Pfam	PF14301	NA	DUF4376
UHGV-0180399_53	Structural annotation	PF14301	NA	NA
UHGV-0180399_54	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0180399_54	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0180399_55	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0180399_56	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0180399_56	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0180399_58	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-0180399_58	UniRef90	UniRef90_A0A010ZMB0	SNF2 family protein,Eco57I restriction endonuclease	NA
UHGV-0180399_58	eggNOG-mapper	1029823.AFIE01000007_gene1881	methylase	NA
UHGV-0180399_58	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0180399_58	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0180399_58	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0180399_58	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA