UHGV-0180408

Genome information

Genome length 36,231 bps

CDS count 49

Completeness 88.62% (medium-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180408
vOTU ID	vOTU-022586
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_562872
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.37
Jumbo phage	No

Genome content
Genome length	36,231 bps
GC content	29.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.59%
Average CDS length	679.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180408_1	PHROG	phrog_1066	NA	unknown function
UHGV-0180408_1	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0180408_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180408_2	UniRef90	UniRef90_UPI00097FF9FC	terminase large subunit	NA
UHGV-0180408_2	eggNOG-mapper	500633.CLOHIR_00364	Phage terminase-like protein large subunit	NA
UHGV-0180408_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180408_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180408_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180408_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0180408_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180408_3	UniRef90	UniRef90_A0A090C6M0	Putative portal protein	NA
UHGV-0180408_3	eggNOG-mapper	1437363.A0A090C6M0_9CAUD	Phage portal protein	NA
UHGV-0180408_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180408_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180408_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0180408_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0180408_4	UniRef90	UniRef90_UPI0018A9577E	Clp protease ClpP	NA
UHGV-0180408_4	eggNOG-mapper	931276.Cspa_c10160	Belongs to the peptidase S14 family	NA
UHGV-0180408_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0180408_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0180408_4	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0180408_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180408_5	UniRef90	UniRef90_UPI001034FBDB	phage major capsid protein	NA
UHGV-0180408_5	eggNOG-mapper	1582155.A0A0A8WJR0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0180408_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180408_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180408_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180408_6	PHROG	phrog_5223	neck protein	connector
UHGV-0180408_6	UniRef90	UniRef90_UPI001A9A7C48	DNA-packaging protein	NA
UHGV-0180408_6	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0180408_6	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0180408_6	Structural annotation	TIGR01560	NA	NA
UHGV-0180408_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0180408_7	UniRef90	UniRef90_UPI0018ABC448	phage head closure protein	NA
UHGV-0180408_7	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0180408_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0180408_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0180408_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180408_8	UniRef90	UniRef90_UPI000F05B9C3	HK97 gp10 family phage protein	NA
UHGV-0180408_9	PHROG	phrog_957	head protein	head and packaging
UHGV-0180408_9	UniRef90	UniRef90_UPI001C0F6033	NA	NA
UHGV-0180408_9	eggNOG-mapper	398512.JQKC01000009_gene457	NA	NA
UHGV-0180408_9	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0180408_10	PHROG	phrog_885	major tail protein	tail
UHGV-0180408_10	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0180408_10	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0180408_11	PHROG	phrog_1021	NA	unknown function
UHGV-0180408_11	eggNOG-mapper	398512.JQKC01000009_gene459	NA	NA
UHGV-0180408_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0180408_13	UniRef90	UniRef90_A0A1C5Y0D2	Phage-related minor tail protein	NA
UHGV-0180408_13	eggNOG-mapper	642492.Clole_1867	Phage tail tape measure protein TP901	NA
UHGV-0180408_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0180408_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0180408_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0180408_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0180408_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180408_14	UniRef90	UniRef90_A0A1C6DUD4	Phage-related protein	NA
UHGV-0180408_14	eggNOG-mapper	665959.HMPREF1013_00190	Phage tail protein	NA
UHGV-0180408_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180408_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180408_15	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0180408_15	PHROG	phrog_19445	tail tip protein Tal	head and packaging
UHGV-0180408_15	UniRef90	UniRef90_UPI0018AA7BAA	SH3 domain-containing protein	NA
UHGV-0180408_15	eggNOG-mapper	1450694.BTS2_0530	Phage minor structural protein	NA
UHGV-0180408_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180408_15	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0180408_15	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0180408_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180408_15	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0180408_15	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0180408_16	PHROG	phrog_4184	NA	unknown function
UHGV-0180408_16	eggNOG-mapper	1151292.QEW_0672	anaphase-promoting complex binding	NA
UHGV-0180408_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0180408_16	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0180408_17	KOfam	K17830	GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11]	NA
UHGV-0180408_17	UniRef90	UniRef90_A0A6L5XGX1	FAD-dependent oxidoreductase	NA
UHGV-0180408_17	eggNOG-mapper	1158294.JOMI01000003_gene2017	geranylgeranyl reductase activity	NA
UHGV-0180408_17	Pfam	PF12831	FAD dependent oxidoreductase	FAD_oxidored
UHGV-0180408_17	COG	COG0644	Dehydrogenase (flavoprotein)	NA
UHGV-0180408_19	UniRef90	UniRef90_A0A101XXU5	Uracil-DNA glycosylase	NA
UHGV-0180408_19	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0180408_20	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0180408_20	eggNOG-mapper	1105031.HMPREF1141_0490	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0180408_20	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0180408_20	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0180408_21	PHROG	phrog_1863	NA	unknown function
UHGV-0180408_21	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0180408_21	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0180408_22	PHROG	phrog_1129	holin	lysis
UHGV-0180408_22	UniRef90	UniRef90_A0A0B3VH17	Holin	NA
UHGV-0180408_22	eggNOG-mapper	702450.CUW_2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180408_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180408_22	Structural annotation	PF06946	NA	NA
UHGV-0180408_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180408_23	PHROG	phrog_435	endolysin	lysis
UHGV-0180408_23	UniRef90	UniRef90_UPI0018A97EC2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180408_23	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0180408_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0180408_23	Pfam	PF19087	NA	DUF5776
UHGV-0180408_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180408_23	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0180408_24	PHROG	phrog_9996	NA	unknown function
UHGV-0180408_24	UniRef90	UniRef90_UPI0011071500	replication-relaxation family protein	NA
UHGV-0180408_24	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0180408_24	Structural annotation	PF13814, MF_01819, NF041423, COG1733	NA	NA
UHGV-0180408_25	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0180408_25	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180408_25	UniRef90	UniRef90_A0A267MQD1	FtsK domain-containing protein	NA
UHGV-0180408_25	eggNOG-mapper	742743.HMPREF9453_00743	FtsK SpoIIIE family protein	NA
UHGV-0180408_25	PADLOC	SspH_00004	SspH	SSP
UHGV-0180408_25	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0180408_25	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0180408_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180408_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0180408_26	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0180408_26	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0180408_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180408_26	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180408_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180408_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180408_26	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0180408_27	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0180408_27	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0180408_27	UniRef90	UniRef90_UPI0011069CE3	helix-turn-helix domain-containing protein	NA
UHGV-0180408_27	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180408_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180408_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180408_29	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180408_29	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0180408_29	UniRef90	UniRef90_UPI0011061316	helix-turn-helix domain-containing protein	NA
UHGV-0180408_29	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180408_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180408_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180408_29	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0180408_32	UniRef90	UniRef90_UPI001105B88F	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0180408_32	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0180408_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180408_34	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0180408_34	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0180408_34	Structural annotation	PF21578	NA	NA
UHGV-0180408_35	PHROG	phrog_824	NA	unknown function
UHGV-0180408_35	UniRef90	UniRef90_UPI001105A33E	VRR-NUC domain-containing protein	NA
UHGV-0180408_35	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0180408_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0180408_36	PHROG	phrog_1974	NA	unknown function
UHGV-0180408_36	UniRef90	UniRef90_A0A371ISD9	Nucleoid-associated protein	NA
UHGV-0180408_36	eggNOG-mapper	1301100.HG529375_gene4038	37-kD nucleoid-associated bacterial protein	NA
UHGV-0180408_36	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0180408_36	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0180408_36	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0180408_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180408_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0180408_37	UniRef90	UniRef90_UPI001AE15354	phage antirepressor KilAC domain-containing protein	NA
UHGV-0180408_37	eggNOG-mapper	1415775.U729_2580	BRO family, N-terminal domain	NA
UHGV-0180408_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180408_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180408_37	COG	COG3617	Prophage antirepressor	NA
UHGV-0180408_37	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0180408_39	PHROG	phrog_5164	NA	unknown function
UHGV-0180408_39	Structural annotation	PF06892	NA	NA
UHGV-0180408_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180408_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180408_42	UniRef90	UniRef90_A0A6N3G1G0	Single-stranded DNA-binding protein	NA
UHGV-0180408_42	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180408_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180408_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180408_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180408_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180408_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180408_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180408_46	UniRef90	UniRef90_A0A1C5YXD8	Phage transcriptional regulator, RinA family	NA
UHGV-0180408_46	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-0180408_46	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0180408_46	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0180408_47	PHROG	phrog_9079	NA	unknown function
UHGV-0180408_47	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0180408_48	Structural annotation	PF09629, NF000331	NA	NA
UHGV-0180408_49	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0180408_49	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180408_49	UniRef90	UniRef90_UPI0018AC6A72	HNH endonuclease	NA
UHGV-0180408_49	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0180408_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA