UHGV-0180455

Genome information

Genome length 52,406 bps

CDS count 94

Completeness 90.94% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180455
vOTU ID	vOTU-070257
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587708
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.47
Jumbo phage	No

Genome content
Genome length	52,406 bps
GC content	49.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	90.71%
Average CDS length	508.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180455_1	PHROG	phrog_1709	NA	unknown function
UHGV-0180455_1	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-0180455_2	PHROG	phrog_419	NA	unknown function
UHGV-0180455_2	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0180455_2	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0180455_2	Structural annotation	PF14083	NA	NA
UHGV-0180455_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180455_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180455_3	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0180455_3	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0180455_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180455_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180455_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0180455_4	PHROG	phrog_15768	NA	unknown function
UHGV-0180455_4	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0180455_4	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0180455_4	Pfam	PF19808	NA	DUF6291
UHGV-0180455_4	Structural annotation	PF19808	NA	NA
UHGV-0180455_5	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0180455_8	Structural annotation	NF041588	NA	NA
UHGV-0180455_14	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0180455_14	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0180455_14	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0180455_14	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0180455_16	Structural annotation	PF16677	NA	NA
UHGV-0180455_17	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0180455_20	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0180455_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180455_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180455_21	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0180455_21	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0180455_21	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0180455_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180455_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180455_21	Structural annotation	PF01507, MF_00064, NF003587, COG0175	NA	NA
UHGV-0180455_23	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0180455_25	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180455_25	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0180455_25	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0180455_25	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0180455_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180455_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180455_28	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180455_28	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0180455_28	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0180455_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180455_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180455_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180455_28	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0180455_29	PHROG	phrog_4572	NA	unknown function
UHGV-0180455_29	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0180455_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180455_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180455_30	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0180455_30	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180455_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180455_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180455_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180455_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180455_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180455_31	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180455_31	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0180455_31	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0180455_31	Pfam	PF04404	ERF superfamily	ERF
UHGV-0180455_31	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0180455_33	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0180455_33	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0180455_33	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0180455_33	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0180455_33	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0180455_34	Structural annotation	PF14143	NA	NA
UHGV-0180455_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180455_35	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0180455_37	Structural annotation	TIGR03826	NA	NA
UHGV-0180455_39	Structural annotation	PF10922	NA	NA
UHGV-0180455_40	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0180455_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180455_40	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0180455_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180455_41	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0180455_41	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0180455_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0180455_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180455_46	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0180455_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180455_46	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180455_47	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180455_47	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0180455_47	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0180455_47	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0180455_47	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0180455_47	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0180455_47	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0180455_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0180455_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0180455_48	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0180455_48	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0180455_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-0180455_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0180455_48	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0180455_50	Structural annotation	PF07878	NA	NA
UHGV-0180455_51	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180455_51	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0180455_51	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0180455_52	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0180455_53	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0180455_54	PHROG	phrog_16490	NA	unknown function
UHGV-0180455_54	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180455_59	eggNOG-mapper	1235802.C823_04625	NA	NA
UHGV-0180455_59	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0180455_60	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180455_60	UniRef90	UniRef90_E6MK73	AP2 domain protein	NA
UHGV-0180455_60	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0180455_60	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0180455_63	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0180455_63	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0180455_63	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0180455_63	Structural annotation	PF10651	NA	NA
UHGV-0180455_64	PHROG	phrog_15303	NA	unknown function
UHGV-0180455_66	KOfam	K07273	acm; lysozyme	NA
UHGV-0180455_66	PHROG	phrog_291	endolysin	lysis
UHGV-0180455_66	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0180455_66	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0180455_66	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180455_66	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180455_66	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0180455_67	PHROG	phrog_1382	NA	unknown function
UHGV-0180455_67	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0180455_69	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0180455_69	COG	COG5492	NA	NA
UHGV-0180455_70	PHROG	phrog_9534	head protein	head and packaging
UHGV-0180455_70	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-0180455_71	PHROG	phrog_18725	NA	unknown function
UHGV-0180455_71	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0180455_72	PHROG	phrog_13879	NA	unknown function
UHGV-0180455_72	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0180455_72	Pfam	PF19789	NA	DUF6273
UHGV-0180455_72	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0180455_73	PHROG	phrog_1194	NA	unknown function
UHGV-0180455_73	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0180455_73	Pfam	PF20458	NA	DUF6711
UHGV-0180455_73	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180455_74	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180455_74	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0180455_74	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0180455_75	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0180455_76	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0180455_76	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0180455_76	Pfam	PF16478	NA	DUF5055
UHGV-0180455_76	Structural annotation	PF16478	NA	NA
UHGV-0180455_77	PHROG	phrog_158	major tail protein	tail
UHGV-0180455_77	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0180455_77	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0180455_77	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0180455_78	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0180455_79	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0180455_80	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0180455_81	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0180455_81	Structural annotation	TIGR01560	NA	NA
UHGV-0180455_82	PHROG	phrog_29	major head protein	head and packaging
UHGV-0180455_82	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0180455_82	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0180455_82	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0180455_82	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0180455_86	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180455_86	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0180455_86	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180455_86	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180455_86	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180455_89	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0180455_89	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0180455_89	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0180455_89	COG	COG5410	NA	NA
UHGV-0180455_89	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0180455_91	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0180455_91	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0180455_91	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0180455_91	eggNOG-mapper	411469.EUBHAL_01860	Resolvase, N terminal domain	NA
UHGV-0180455_91	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180455_91	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180455_91	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0180455_92	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0180455_93	eggNOG-mapper	706433.HMPREF9430_00388	NA	NA
UHGV-0180455_93	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA