UHGV-0180539

Genome information

Genome length 35,521 bps

CDS count 52

Completeness 78.42% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180539
vOTU ID	vOTU-022588
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571911
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.32
Jumbo phage	No

Genome content
Genome length	35,521 bps
GC content	55.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.84%
Average CDS length	645.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180539_2	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0180539_2	Structural annotation	NF012201	NA	NA
UHGV-0180539_3	PHROG	phrog_521	tail protein	tail
UHGV-0180539_3	UniRef90	UniRef90_A0A396Q625	NA	NA
UHGV-0180539_3	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0180539_3	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0180539_3	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0180539_3	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0180539_4	PHROG	phrog_1608	tail protein	tail
UHGV-0180539_4	UniRef90	UniRef90_A0A3E2XXS7	Phage tail protein	NA
UHGV-0180539_4	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0180539_4	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0180539_4	COG	COG3299	NA	NA
UHGV-0180539_4	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0180539_5	PHROG	phrog_120	baseplate protein	tail
UHGV-0180539_5	UniRef90	UniRef90_A0A3E2XZ30	NA	NA
UHGV-0180539_5	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0180539_5	Pfam	PF10934	NA	DUF2634
UHGV-0180539_5	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0180539_5	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0180539_6	PHROG	phrog_579	NA	unknown function
UHGV-0180539_6	UniRef90	UniRef90_A0A417BZ23	NA	NA
UHGV-0180539_6	eggNOG-mapper	1352230.S6C459_9CAUD	NA	NA
UHGV-0180539_6	Pfam	PF10844	NA	DUF2577
UHGV-0180539_6	Structural annotation	PF10844	NA	NA
UHGV-0180539_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0180539_7	PHROG	phrog_400	tail protein	tail
UHGV-0180539_7	UniRef90	UniRef90_A0A417IT88	Peptidase_M23 domain-containing protein	NA
UHGV-0180539_7	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0180539_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0180539_7	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0180539_7	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0180539_8	PHROG	phrog_380	endolysin	lysis
UHGV-0180539_8	UniRef90	UniRef90_A0A417HNW8	LysM domain-containing protein	NA
UHGV-0180539_8	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0180539_8	Pfam	PF01476	LysM domain	LysM
UHGV-0180539_8	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0180539_8	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0180539_9	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0180539_9	UniRef90	UniRef90_A0A417BYU2	TMP_3 domain-containing protein	NA
UHGV-0180539_9	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0180539_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180539_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180539_9	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0180539_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0180539_10	UniRef90	UniRef90_A0A3E2XXT8	Copper amine oxidase N-terminal domain-containing protein	NA
UHGV-0180539_10	eggNOG-mapper	203119.Cthe_0779	CAP-associated N-terminal	NA
UHGV-0180539_10	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0180539_10	COG	COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	NA
UHGV-0180539_11	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0180539_11	UniRef90	UniRef90_A0A3E2XXX4	Phage portal protein	NA
UHGV-0180539_11	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0180539_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0180539_11	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0180539_12	PHROG	phrog_365	tail protein	tail
UHGV-0180539_12	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0180539_12	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0180539_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0180539_12	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0180539_13	PHROG	phrog_279	tail sheath	tail
UHGV-0180539_13	UniRef90	UniRef90_A0A3E2XXT6	Phage tail protein	NA
UHGV-0180539_13	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0180539_13	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0180539_13	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0180539_13	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0180539_13	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0180539_14	PHROG	phrog_966	NA	unknown function
UHGV-0180539_14	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0180539_15	PHROG	phrog_525	NA	unknown function
UHGV-0180539_15	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0180539_15	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0180539_15	Pfam	PF20765	NA	DUF6838
UHGV-0180539_15	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0180539_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180539_16	UniRef90	UniRef90_A0A417BYY6	HK97 gp10 family phage protein	NA
UHGV-0180539_16	eggNOG-mapper	97138.C820_00229	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0180539_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0180539_16	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0180539_17	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0180539_17	UniRef90	UniRef90_UPI001B11203B	NA	NA
UHGV-0180539_17	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0180539_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0180539_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0180539_18	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-0180539_18	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0180539_18	Structural annotation	PF05135	NA	NA
UHGV-0180539_19	UniRef90	UniRef90_A0A1M6EXN4	Rho termination factor, N-terminal domain	NA
UHGV-0180539_19	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0180539_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-0180539_20	UniRef90	UniRef90_A0A3E2XZN2	Phage capsid protein	NA
UHGV-0180539_20	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0180539_20	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0180539_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180539_21	UniRef90	UniRef90_UPI0004E27E71	phage scaffolding protein	NA
UHGV-0180539_21	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0180539_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180539_21	Structural annotation	PF06810	NA	NA
UHGV-0180539_22	Structural annotation	PF07073, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-0180539_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0180539_24	UniRef90	UniRef90_A0A3E2XXY5	Phage_Mu_F domain-containing protein	NA
UHGV-0180539_24	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0180539_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0180539_24	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0180539_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0180539_24	COG	COG2369	NA	NA
UHGV-0180539_24	Structural annotation	PF03496, PF04233, MF_04141, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0180539_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180539_25	UniRef90	UniRef90_A0A417BZ11	Phage portal protein	NA
UHGV-0180539_25	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180539_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180539_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0180539_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180539_26	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0180539_26	UniRef90	UniRef90_A0A845MZ56	Phage terminase large subunit	NA
UHGV-0180539_26	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0180539_26	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0180539_26	COG	COG5410	NA	NA
UHGV-0180539_26	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0180539_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0180539_27	UniRef90	UniRef90_A0A417BYR0	Helix-turn-helix domain-containing protein	NA
UHGV-0180539_27	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0180539_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0180539_27	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0180539_27	Structural annotation	PF07141	NA	NA
UHGV-0180539_28	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0180539_28	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0180539_29	UniRef90	UniRef90_UPI001C0096B4	bacteriophage abortive infection AbiH family protein	NA
UHGV-0180539_29	eggNOG-mapper	573061.Clocel_3853	Bacteriophage abortive infection AbiH	NA
UHGV-0180539_29	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0180539_29	Structural annotation	PF14253	NA	NA
UHGV-0180539_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180539_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180539_30	UniRef90	UniRef90_UPI001C028A15	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0180539_30	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0180539_30	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0180539_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180539_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180539_30	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0180539_33	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0180539_33	UniRef90	UniRef90_A0A396QBH7	Nucleotide pyrophosphohydrolase	NA
UHGV-0180539_33	eggNOG-mapper	202752.JL53_00735	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0180539_33	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0180539_33	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0180539_33	Structural annotation	PF03819, MF_01019, NF008986, COG1694	NA	NA
UHGV-0180539_34	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180539_34	UniRef90	UniRef90_A0A3E2XXV5	NA	NA
UHGV-0180539_34	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0180539_34	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0180539_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180539_35	PHROG	phrog_1029	NA	unknown function
UHGV-0180539_35	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0180539_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0180539_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0180539_36	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0180539_36	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0180539_38	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0180539_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0180539_38	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0180539_38	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0180539_38	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0180539_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0180539_38	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0180539_39	PHROG	phrog_862	NA	unknown function
UHGV-0180539_39	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0180539_39	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0180539_40	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0180539_40	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180539_40	UniRef90	UniRef90_A0A3E2XY48	AAA_23 domain-containing protein	NA
UHGV-0180539_40	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0180539_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-0180539_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0180539_40	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0180539_43	Structural annotation	PF11112	NA	NA
UHGV-0180539_47	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-0180539_47	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0180539_47	Pfam	PF05339	NA	DUF739
UHGV-0180539_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0180539_47	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0180539_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0180539_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0180539_48	UniRef90	UniRef90_A0A417ISZ5	Helix-turn-helix domain-containing protein	NA
UHGV-0180539_48	eggNOG-mapper	1123230.ARQJ01000006_gene2611	Peptidase S24-like	NA
UHGV-0180539_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180539_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0180539_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0180539_48	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0180539_49	eggNOG-mapper	1286171.EAL2_c05530	NA	NA
UHGV-0180539_49	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0180539_50	KOfam	K14059	int; integrase	NA
UHGV-0180539_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0180539_50	UniRef90	UniRef90_A0A3E2XZ68	Site-specific integrase	NA
UHGV-0180539_50	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0180539_50	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180539_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180539_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180539_50	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0180539_52	Pfam	PF14501	GHKL domain	HATPase_c_5
UHGV-0180539_52	COG	COG3290	Sensor histidine kinase DipB regulating citrate/malate metabolism	NA