UHGV-0180540

Genome information

Genome length 23,997 bps

CDS count 32

Completeness 56.19% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180540
vOTU ID	vOTU-029157
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571914
BioSample	SAMN06348181
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.44
Jumbo phage	No

Genome content
Genome length	23,997 bps
GC content	40.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	90.67%
Average CDS length	683.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180540_1	KOfam	K14059	int; integrase	NA
UHGV-0180540_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0180540_1	UniRef90	UniRef90_UPI001EDF286E	tyrosine-type recombinase/integrase	NA
UHGV-0180540_1	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0180540_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180540_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180540_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0180540_2	PHROG	phrog_2546	NA	unknown function
UHGV-0180540_2	UniRef90	UniRef90_UPI001D05CE63	hydrogenase maturation nickel metallochaperone HypA	NA
UHGV-0180540_2	eggNOG-mapper	218140.BPSY_1432	NA	NA
UHGV-0180540_2	Structural annotation	PF02701	NA	NA
UHGV-0180540_3	PHROG	phrog_87	metallo-protease	other
UHGV-0180540_3	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-0180540_3	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0180540_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0180540_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0180540_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0180540_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0180540_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180540_4	UniRef90	UniRef90_A0A173S1T7	Transcriptional regulator, y4mF family	NA
UHGV-0180540_4	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0180540_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180540_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0180540_5	UniRef90	UniRef90_R6SLX6	HTH cro/C1-type domain-containing protein	NA
UHGV-0180540_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0180540_5	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0180540_7	PHROG	phrog_6058	NA	unknown function
UHGV-0180540_7	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0180540_7	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0180540_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180540_12	PHROG	phrog_18562	NA	unknown function
UHGV-0180540_12	eggNOG-mapper	717606.PaecuDRAFT_3099	NA	NA
UHGV-0180540_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180540_13	UniRef90	UniRef90_R7MZ29	NA	NA
UHGV-0180540_13	eggNOG-mapper	469618.FVAG_01292	NA	NA
UHGV-0180540_13	Pfam	PF10926	NA	DUF2800
UHGV-0180540_13	COG	COG2887	RecB family exonuclease	NA
UHGV-0180540_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0180540_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180540_14	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0180540_14	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0180540_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0180540_14	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0180540_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0180540_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180540_15	UniRef90	UniRef90_A0A173S361	DNA polymerase I, thermostable	NA
UHGV-0180540_15	eggNOG-mapper	86416.Clopa_0561	DNA polymerase	NA
UHGV-0180540_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0180540_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0180540_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0180540_16	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180540_16	UniRef90	UniRef90_A0A173S1C5	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0180540_16	eggNOG-mapper	1321778.HMPREF1982_02544	Virulence-associated protein E	NA
UHGV-0180540_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0180540_16	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0180540_16	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0180540_17	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180540_17	UniRef90	UniRef90_A0A173S1G6	VRR-NUC domain	NA
UHGV-0180540_17	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0180540_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0180540_18	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180540_18	UniRef90	UniRef90_A0A173S305	DNA methylase	NA
UHGV-0180540_18	eggNOG-mapper	469618.FVAG_01298	SNF2 family N-terminal domain	NA
UHGV-0180540_18	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0180540_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0180540_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0180540_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0180540_18	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0180540_19	PHROG	phrog_17690	NA	unknown function
UHGV-0180540_19	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0180540_19	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0180540_20	PHROG	phrog_31515	NA	unknown function
UHGV-0180540_20	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0180540_21	Structural annotation	MF_00773, NF011481, COG2888	NA	NA
UHGV-0180540_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180540_22	UniRef90	UniRef90_A0A417V855	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0180540_22	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0180540_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0180540_22	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0180540_23	KOfam	K09161	NA	NA
UHGV-0180540_23	PHROG	phrog_6084	NA	unknown function
UHGV-0180540_23	UniRef90	UniRef90_UPI001EEDCDD3	YfbU family protein	NA
UHGV-0180540_23	eggNOG-mapper	536233.CLO_2529	Belongs to the UPF0304 family	NA
UHGV-0180540_23	Pfam	PF03887	YfbU domain	YfbU
UHGV-0180540_23	NCBIFam	NF003936.2	YfbU family protein	NA
UHGV-0180540_23	COG	COG3013	NA	NA
UHGV-0180540_23	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0180540_24	PHROG	phrog_872	NA	unknown function
UHGV-0180540_24	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0180540_24	dbAPIS	APIS052	NA	NA
UHGV-0180540_25	PHROG	phrog_918	NA	unknown function
UHGV-0180540_25	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0180540_25	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0180540_25	Pfam	PF19791	NA	DUF6275
UHGV-0180540_25	Structural annotation	PF19791	NA	NA
UHGV-0180540_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180540_27	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0180540_27	UniRef90	UniRef90_A0A1Q2CAR6	Phage portal protein	NA
UHGV-0180540_27	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0180540_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0180540_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180540_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180540_27	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0180540_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180540_28	PHROG	phrog_10250	NA	unknown function
UHGV-0180540_28	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0180540_28	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0180540_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180540_28	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0180540_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180540_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180540_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180540_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180540_29	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0180540_29	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0180540_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180540_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180540_30	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0180540_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180540_30	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0180540_30	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0180540_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180540_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0180540_30	COG	COG2369	NA	NA
UHGV-0180540_30	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0180540_32	PHROG	phrog_3675	NA	unknown function
UHGV-0180540_32	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0180540_32	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0180540_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0180540_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA