UHGV-0180573

Genome information

Genome length 29,617 bps

CDS count 44

Completeness 70.19% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180573
vOTU ID	vOTU-022473
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587722
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.86
Jumbo phage	No

Genome content
Genome length	29,617 bps
GC content	53.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.81%
Average CDS length	620.52 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180573_1	PHROG	phrog_21718	NA	unknown function
UHGV-0180573_1	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180573_2	PHROG	phrog_3754	NA	unknown function
UHGV-0180573_2	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0180573_3	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0180573_3	Pfam	PF09274	ParG	ParG
UHGV-0180573_6	PHROG	phrog_15303	NA	unknown function
UHGV-0180573_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0180573_8	PHROG	phrog_291	endolysin	lysis
UHGV-0180573_8	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0180573_8	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0180573_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180573_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180573_8	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0180573_9	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0180573_10	PHROG	phrog_3558	tail protein	tail
UHGV-0180573_10	UniRef90	UniRef90_A0A8B3ALT8	Prophage_tail domain-containing protein	NA
UHGV-0180573_10	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0180573_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180573_10	COG	COG4926	Phage-related protein	NA
UHGV-0180573_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0180573_11	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0180573_11	eggNOG-mapper	1120933.ATUY01000002_gene165	NA	NA
UHGV-0180573_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0180573_11	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0180573_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0180573_12	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0180573_12	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0180573_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180573_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180573_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180573_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180573_15	PHROG	phrog_885	major tail protein	tail
UHGV-0180573_15	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0180573_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0180573_16	Structural annotation	PF13554	NA	NA
UHGV-0180573_17	PHROG	phrog_17977	NA	unknown function
UHGV-0180573_17	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0180573_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180573_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-0180573_19	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0180573_19	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0180573_19	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0180573_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180573_22	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0180573_22	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0180573_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0180573_23	PHROG	phrog_8680	NA	unknown function
UHGV-0180573_23	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0180573_23	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0180573_23	Pfam	PF14386	NA	DUF4417
UHGV-0180573_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180573_23	Structural annotation	PF14386	NA	NA
UHGV-0180573_25	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0180573_25	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0180573_25	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0180573_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0180573_25	COG	COG2369	NA	NA
UHGV-0180573_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0180573_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180573_26	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0180573_26	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180573_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180573_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0180573_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180573_27	PHROG	phrog_10250	NA	unknown function
UHGV-0180573_27	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0180573_27	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0180573_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180573_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180573_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180573_27	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180573_28	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0180573_28	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0180573_28	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0180573_28	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0180573_28	Structural annotation	PF16677	NA	NA
UHGV-0180573_29	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0180573_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180573_31	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180573_31	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180573_31	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0180573_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0180573_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0180573_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0180573_32	PHROG	phrog_3136	NA	unknown function
UHGV-0180573_32	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0180573_32	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0180573_32	Pfam	PF04266	ASCH domain	ASCH
UHGV-0180573_32	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0180573_32	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0180573_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180573_33	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180573_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180573_33	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0180573_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180573_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180573_35	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0180573_35	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0180573_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180573_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180573_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0180573_36	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0180573_36	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0180573_36	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0180573_36	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0180573_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180573_36	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0180573_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180573_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180573_38	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0180573_38	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180573_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180573_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180573_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180573_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180573_38	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0180573_39	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180573_39	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0180573_39	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0180573_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0180573_39	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0180573_41	Structural annotation	PF14120	NA	NA
UHGV-0180573_44	PHROG	phrog_27197	NA	unknown function
UHGV-0180573_44	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0180573_44	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0180573_44	Structural annotation	NF007410	NA	NA