UHGV-0180601

Genome information

Genome length 43,866 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180601
vOTU ID	vOTU-064483
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586833
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.77
Jumbo phage	No

Genome content
Genome length	43,866 bps
GC content	58.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.15%
Average CDS length	679.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180601_1	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0180601_2	UniRef90	UniRef90_UPI0013C3FC23	chromate transporter	NA
UHGV-0180601_2	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0180601_5	UniRef90	UniRef90_UPI00141260EC	helix-turn-helix domain-containing protein	NA
UHGV-0180601_5	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0180601_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180601_6	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0180601_6	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0180601_6	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0180601_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180601_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180601_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180601_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180601_7	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0180601_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180601_8	KOfam	K07584	NA	NA
UHGV-0180601_8	PHROG	phrog_4478	peptidase	other
UHGV-0180601_8	UniRef90	UniRef90_UPI0015B63E39	ribosomal-processing cysteine protease Prp	NA
UHGV-0180601_8	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0180601_8	COG	COG2868	NA	NA
UHGV-0180601_8	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0180601_9	PHROG	phrog_13908	NA	unknown function
UHGV-0180601_9	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-0180601_9	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0180601_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0180601_10	UniRef90	UniRef90_A0A2V2GQW4	N4-gp56 family major capsid protein	NA
UHGV-0180601_10	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0180601_10	Pfam	PF13252	NA	DUF4043
UHGV-0180601_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0180601_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180601_11	PHROG	phrog_15239	NA	unknown function
UHGV-0180601_12	PHROG	phrog_12105	NA	unknown function
UHGV-0180601_12	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0180601_13	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0180601_13	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0180601_13	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0180601_14	Structural annotation	NF038340	NA	NA
UHGV-0180601_15	PHROG	phrog_372	tail protein	tail
UHGV-0180601_15	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0180601_15	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0180601_15	Pfam	PF05895	NA	DUF859
UHGV-0180601_15	COG	COG4675	Phage tail collar domain	NA
UHGV-0180601_15	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0180601_17	eggNOG-mapper	479433.Caci_0480	ADP-glyceromanno-heptose 6-epimerase activity	NA
UHGV-0180601_17	COG	COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	NA
UHGV-0180601_17	Structural annotation	PF03071, NF038299, COG3306	NA	NA
UHGV-0180601_18	PHROG	phrog_1863	NA	unknown function
UHGV-0180601_18	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0180601_19	PHROG	phrog_1129	holin	lysis
UHGV-0180601_19	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0180601_19	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180601_19	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180601_19	Structural annotation	PF06946	NA	NA
UHGV-0180601_20	PHROG	phrog_918	NA	unknown function
UHGV-0180601_20	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0180601_20	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0180601_20	Pfam	PF19791	NA	DUF6275
UHGV-0180601_20	Structural annotation	PF19791	NA	NA
UHGV-0180601_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180601_21	PHROG	phrog_1493	endolysin	lysis
UHGV-0180601_21	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0180601_21	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0180601_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0180601_21	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180601_21	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0180601_21	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0180601_22	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0180601_23	PHROG	phrog_22978	NA	unknown function
UHGV-0180601_23	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0180601_23	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0180601_24	UniRef90	UniRef90_A0A658JVX5	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0180601_27	PHROG	phrog_16490	NA	unknown function
UHGV-0180601_27	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0180601_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180601_29	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0180601_29	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0180601_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180601_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0180601_30	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0180601_30	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0180601_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180601_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180601_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180601_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180601_30	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0180601_31	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0180601_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180601_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180601_31	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0180601_33	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0180601_36	Pfam	PF04448	NA	DUF551
UHGV-0180601_36	Structural annotation	PF04448	NA	NA
UHGV-0180601_37	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0180601_37	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0180601_37	eggNOG-mapper	428127.EUBDOL_01514	NA	NA
UHGV-0180601_37	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0180601_40	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180601_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180601_40	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0180601_40	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180601_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180601_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180601_40	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0180601_41	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0180601_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180601_42	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180601_42	UniRef90	UniRef90_A0A0F0CBC0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180601_42	eggNOG-mapper	871963.Desdi_1341	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0180601_42	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0180601_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180601_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180601_43	PHROG	phrog_22543	NA	unknown function
UHGV-0180601_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180601_45	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180601_45	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180601_45	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0180601_45	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0180601_46	PHROG	phrog_15768	NA	unknown function
UHGV-0180601_46	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0180601_46	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0180601_46	Pfam	PF19808	NA	DUF6291
UHGV-0180601_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180601_46	Structural annotation	PF19808	NA	NA
UHGV-0180601_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180601_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180601_47	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-0180601_47	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0180601_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180601_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180601_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180601_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180601_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180601_48	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0180601_49	PHROG	phrog_7566	NA	unknown function
UHGV-0180601_49	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0180601_49	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0180601_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180601_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0180601_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180601_50	Structural annotation	PF05772	NA	NA
UHGV-0180601_51	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0180601_51	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-0180601_52	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0180601_52	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0180601_52	Pfam	PF06378	NA	DUF1071
UHGV-0180601_52	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0180601_55	Structural annotation	PF13384	NA	NA
UHGV-0180601_56	Pfam	PF04448	NA	DUF551
UHGV-0180601_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180601_61	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0180601_61	UniRef90	UniRef90_A0A810Q5N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0180601_61	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0180601_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180601_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180601_61	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA