UHGV-0180605

Genome information

Genome length 49,440 bps

CDS count 69

Completeness 62.55% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180605
vOTU ID	vOTU-022590
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586830
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.35
Jumbo phage	No

Genome content
Genome length	49,440 bps
GC content	40.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	82.28%
Average CDS length	593.74 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180605_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0180605_7	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0180605_7	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0180605_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180605_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0180605_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0180605_7	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0180605_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180605_8	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0180605_8	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180605_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180605_8	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0180605_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180605_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180605_9	UniRef90	UniRef90_A0A317UDF6	HTH cro/C1-type domain-containing protein	NA
UHGV-0180605_9	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0180605_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180605_9	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0180605_9	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0180605_10	PHROG	phrog_3306	NA	unknown function
UHGV-0180605_10	UniRef90	UniRef90_UPI00067EE4BE	NA	NA
UHGV-0180605_10	eggNOG-mapper	469616.FMAG_00734	NA	NA
UHGV-0180605_10	AcrCatalog	cluster_5078	NA	NA
UHGV-0180605_10	Pfam	PF19670	NA	DUF6173
UHGV-0180605_14	UniRef90	UniRef90_UPI00189741AE	NA	NA
UHGV-0180605_14	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0180605_14	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0180605_14	Pfam	PF11611	NA	DUF4352
UHGV-0180605_15	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0180605_15	PHROG	phrog_8810	NA	unknown function
UHGV-0180605_15	UniRef90	UniRef90_A0A1C5RZQ5	Stage 0 sporulation protein A homolog	NA
UHGV-0180605_15	eggNOG-mapper	1123009.AUID01000024_gene1449	NA	NA
UHGV-0180605_15	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0180605_15	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0180605_15	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0180605_15	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0180605_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0180605_16	PHROG	phrog_6745	endolysin	lysis
UHGV-0180605_16	UniRef90	UniRef90_A0A6L8SXR6	CHAP domain-containing protein	NA
UHGV-0180605_16	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0180605_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180605_16	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180605_16	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0180605_16	Structural annotation	PF01183, NF003627, COG3757	NA	NA
UHGV-0180605_18	PHROG	phrog_11105	NA	unknown function
UHGV-0180605_19	PHROG	phrog_6616	tail protein	tail
UHGV-0180605_19	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0180605_19	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0180605_19	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180605_19	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-0180605_20	PHROG	phrog_1194	NA	unknown function
UHGV-0180605_20	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0180605_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180605_22	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180605_22	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-0180605_22	eggNOG-mapper	397290.C810_01368	NA	NA
UHGV-0180605_22	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180605_22	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0180605_23	PHROG	phrog_28918	NA	unknown function
UHGV-0180605_23	UniRef90	UniRef90_A0A1C5RYZ6	Phage-related protein	NA
UHGV-0180605_23	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0180605_23	COG	COG5412	Phage-related protein	NA
UHGV-0180605_24	PHROG	phrog_28918	NA	unknown function
UHGV-0180605_24	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0180605_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180605_24	Structural annotation	PF20155	NA	NA
UHGV-0180605_27	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0180605_27	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0180605_28	PHROG	phrog_1129	holin	lysis
UHGV-0180605_28	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0180605_28	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180605_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180605_28	Structural annotation	PF16079	NA	NA
UHGV-0180605_29	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0180605_29	AcrCatalog	cluster_24841	NA	NA
UHGV-0180605_30	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180605_31	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0180605_32	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0180605_34	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0180605_34	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0180605_34	UniRef90	UniRef90_A0A413B1B6	Reverse transcriptase domain-containing protein	NA
UHGV-0180605_34	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0180605_34	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0180605_34	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0180605_34	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0180605_34	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0180605_36	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0180605_36	Structural annotation	PF19789	NA	NA
UHGV-0180605_38	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0180605_40	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0180605_41	PHROG	phrog_16490	NA	unknown function
UHGV-0180605_41	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0180605_43	PHROG	phrog_21718	NA	unknown function
UHGV-0180605_43	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0180605_44	UniRef90	UniRef90_A0A412EMQ9	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0180605_44	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0180605_45	PHROG	phrog_937	hemolysin	other
UHGV-0180605_46	PHROG	phrog_29	major head protein	head and packaging
UHGV-0180605_46	UniRef90	UniRef90_A0A0E2H7J5	S-l_SbsC_C domain-containing protein	NA
UHGV-0180605_46	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0180605_46	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0180605_46	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0180605_47	PHROG	phrog_909	major head protein	head and packaging
UHGV-0180605_47	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0180605_47	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0180605_47	Structural annotation	PF02924	NA	NA
UHGV-0180605_48	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0180605_48	eggNOG-mapper	1298920.KI911353_gene2662	NA	NA
UHGV-0180605_48	Structural annotation	PF14265	NA	NA
UHGV-0180605_49	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0180605_49	UniRef90	UniRef90_K1V7A5	Phage Mu protein F like protein	NA
UHGV-0180605_49	eggNOG-mapper	1052684.PPM_2647	phage Mu protein	NA
UHGV-0180605_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0180605_49	COG	COG2369	NA	NA
UHGV-0180605_49	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0180605_50	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180605_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180605_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180605_51	UniRef90	UniRef90_A0A412EMP0	Phage portal protein	NA
UHGV-0180605_51	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180605_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180605_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180605_52	KOfam	K07496	K07496; putative transposase	NA
UHGV-0180605_52	PHROG	phrog_506	transposase	integration and excision
UHGV-0180605_52	UniRef90	UniRef90_A0A1I0WW01	Putative transposase (Fragment)	NA
UHGV-0180605_52	eggNOG-mapper	537007.BLAHAN_05289	NA	NA
UHGV-0180605_52	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0180605_52	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0180605_52	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0180605_52	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0180605_52	COG	COG0675	Transposase	NA
UHGV-0180605_53	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180605_53	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0180605_53	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0180605_53	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0180605_53	Structural annotation	PF07374, MF_00674, TIGR02984, COG1595	NA	NA
UHGV-0180605_54	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0180605_54	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-0180605_54	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0180605_54	COG	COG5410	NA	NA
UHGV-0180605_54	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0180605_55	PHROG	phrog_3886	NA	unknown function
UHGV-0180605_55	eggNOG-mapper	742733.HMPREF9469_05056	NA	NA
UHGV-0180605_56	KOfam	K03744	lemA; LemA protein	NA
UHGV-0180605_56	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0180605_56	UniRef90	UniRef90_A0A414SKJ0	LemA family protein	NA
UHGV-0180605_56	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0180605_56	Pfam	PF04011	LemA family	LemA
UHGV-0180605_56	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0180605_56	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0180605_57	PHROG	phrog_3002	NA	unknown function
UHGV-0180605_69	UniRef90	UniRef90_A0A6N2TPV5	RHH_1 domain-containing protein	NA
UHGV-0180605_69	Structural annotation	PF01402, NF041793, COG4710	NA	NA