UHGV-0180607

Genome information

Genome length 19,812 bps

CDS count 41

Completeness 57.58% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180607
vOTU ID	vOTU-029166
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_582877
BioSample	SAMN09781737
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.06
Jumbo phage	No

Genome content
Genome length	19,812 bps
GC content	60.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.73%
Average CDS length	440.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180607_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0180607_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180607_1	UniRef90	UniRef90_A0A7C6HGS4	HNH endonuclease	NA
UHGV-0180607_1	eggNOG-mapper	755731.Clo1100_0542	HNH nucleases	NA
UHGV-0180607_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180607_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0180607_2	UniRef90	UniRef90_UPI001C10554C	cysteine-rich KTR domain-containing protein	NA
UHGV-0180607_2	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0180607_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180607_3	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0180607_3	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0180607_7	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0180607_8	Structural annotation	PF02882, MF_01576, NF010775, COG0190	NA	NA
UHGV-0180607_11	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0180607_11	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0180607_11	UniRef90	UniRef90_UPI001D07FBC5	dUTP diphosphatase	NA
UHGV-0180607_11	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0180607_11	Pfam	PF00692	dUTPase	dUTPase
UHGV-0180607_11	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0180607_11	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0180607_11	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0180607_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180607_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180607_12	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-0180607_12	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0180607_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180607_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180607_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180607_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180607_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180607_13	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0180607_13	PHROG	phrog_4433	NA	unknown function
UHGV-0180607_13	eggNOG-mapper	269482.Bcep1808_1157	Flagellar Assembly Protein A	NA
UHGV-0180607_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0180607_13	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0180607_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180607_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180607_15	UniRef90	UniRef90_A0A3A8Z521	DNA helicase	NA
UHGV-0180607_15	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0180607_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0180607_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180607_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180607_15	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0180607_16	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180607_16	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-0180607_16	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0180607_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180607_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180607_16	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0180607_18	PHROG	phrog_6058	NA	unknown function
UHGV-0180607_18	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0180607_18	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0180607_21	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0180607_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180607_21	UniRef90	UniRef90_A0A173S0H0	Antitoxin PezA	NA
UHGV-0180607_21	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-0180607_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180607_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180607_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180607_24	PHROG	phrog_38135	NA	unknown function
UHGV-0180607_24	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-0180607_24	Pfam	PF14020	NA	DUF4236
UHGV-0180607_24	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0180607_25	KOfam	K14059	int; integrase	NA
UHGV-0180607_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0180607_25	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0180607_25	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0180607_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180607_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180607_25	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0180607_26	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0180607_27	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0180607_28	PHROG	phrog_16490	NA	unknown function
UHGV-0180607_28	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180607_30	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0180607_33	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0180607_33	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0180607_33	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0180607_34	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0180607_34	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0180607_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180607_35	PHROG	phrog_15001	endolysin	lysis
UHGV-0180607_35	UniRef90	UniRef90_UPI001EE14AF5	peptidoglycan recognition protein family protein	NA
UHGV-0180607_35	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0180607_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0180607_35	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0180607_35	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0180607_37	PHROG	phrog_1129	holin	lysis
UHGV-0180607_37	UniRef90	UniRef90_UPI001EDED0D7	phage holin family protein	NA
UHGV-0180607_37	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180607_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180607_37	Structural annotation	PF06946	NA	NA
UHGV-0180607_38	PHROG	phrog_1863	NA	unknown function
UHGV-0180607_38	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0180607_39	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA