UHGV-0180634

Genome information

Genome length 27,721 bps

CDS count 38

Completeness 70.98% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180634
vOTU ID	vOTU-029171
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587931
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.27
Jumbo phage	No

Genome content
Genome length	27,721 bps
GC content	49.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.23%
Average CDS length	682.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180634_1	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0180634_1	PHROG	phrog_7713	NA	unknown function
UHGV-0180634_1	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0180634_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0180634_1	COG	COG1357	NA	NA
UHGV-0180634_2	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180634_2	PHROG	phrog_18750	NA	unknown function
UHGV-0180634_2	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0180634_2	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-0180634_2	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0180634_2	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0180634_2	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0180634_4	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0180634_4	UniRef90	UniRef90_A0A5B6P9C0	XRE family transcriptional regulator	NA
UHGV-0180634_4	eggNOG-mapper	1007096.BAGW01000023_gene157	NA	NA
UHGV-0180634_4	Structural annotation	TIGR03070	NA	NA
UHGV-0180634_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0180634_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0180634_5	UniRef90	UniRef90_A0A7X5E0L6	XRE family transcriptional regulator	NA
UHGV-0180634_5	eggNOG-mapper	938278.CAJO01000051_gene819	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0180634_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180634_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0180634_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0180634_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF007257, COG1974, COG1396	NA	NA
UHGV-0180634_6	PHROG	phrog_1847	NA	unknown function
UHGV-0180634_6	UniRef90	UniRef90_A0A1E3UAB7	T5orf172 domain-containing protein	NA
UHGV-0180634_6	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0180634_6	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0180634_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0180634_6	Structural annotation	PF19962	NA	NA
UHGV-0180634_7	KOfam	K14059	int; integrase	NA
UHGV-0180634_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0180634_7	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0180634_7	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0180634_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180634_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180634_7	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0180634_10	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0180634_10	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-0180634_10	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0180634_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180634_10	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-0180634_11	PHROG	phrog_608	holin	lysis
UHGV-0180634_11	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0180634_11	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0180634_11	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0180634_11	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0180634_12	PHROG	phrog_1863	NA	unknown function
UHGV-0180634_12	eggNOG-mapper	1291050.JAGE01000001_gene2942	NA	NA
UHGV-0180634_13	PHROG	phrog_27545	NA	unknown function
UHGV-0180634_13	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0180634_13	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0180634_13	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0180634_15	Structural annotation	PF02973	NA	NA
UHGV-0180634_16	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0180634_18	PHROG	phrog_6616	tail protein	tail
UHGV-0180634_18	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0180634_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0180634_18	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0180634_19	PHROG	phrog_1194	NA	unknown function
UHGV-0180634_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180634_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180634_20	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0180634_20	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0180634_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180634_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180634_21	PHROG	phrog_8355	NA	unknown function
UHGV-0180634_21	UniRef90	UniRef90_A0A1H3Y2Z5	Bacteriophage Gp15 protein	NA
UHGV-0180634_21	eggNOG-mapper	717606.PaecuDRAFT_3131	Bacteriophage Gp15 protein	NA
UHGV-0180634_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180634_22	PHROG	phrog_8300	NA	unknown function
UHGV-0180634_22	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0180634_22	Structural annotation	PF06854	NA	NA
UHGV-0180634_23	PHROG	phrog_820	major tail protein	tail
UHGV-0180634_23	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-0180634_23	eggNOG-mapper	1415775.U729_2611	NA	NA
UHGV-0180634_23	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0180634_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180634_24	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0180634_24	UniRef90	UniRef90_UPI0015BCA354	minor capsid protein	NA
UHGV-0180634_24	eggNOG-mapper	1122918.KB907248_gene4493	NA	NA
UHGV-0180634_24	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0180634_24	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0180634_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180634_25	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0180634_26	PHROG	phrog_8710	NA	unknown function
UHGV-0180634_26	eggNOG-mapper	585501.HMPREF6123_0832	NA	NA
UHGV-0180634_26	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0180634_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180634_27	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0180634_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0180634_28	UniRef90	UniRef90_R6DLA5	Phage major capsid protein	NA
UHGV-0180634_28	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0180634_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180634_29	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0180634_29	Structural annotation	MF_02110	NA	NA
UHGV-0180634_30	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0180634_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180634_31	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0180634_31	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0180634_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180634_31	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0180634_31	COG	COG2369	NA	NA
UHGV-0180634_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180634_32	UniRef90	UniRef90_R6E386	Phage minor capsid protein	NA
UHGV-0180634_32	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0180634_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180634_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180634_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180634_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0180634_33	UniRef90	UniRef90_A0A1M4ZB17	Phage terminase, large subunit, PBSX family	NA
UHGV-0180634_33	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0180634_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180634_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180634_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0180634_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0180634_34	UniRef90	UniRef90_UPI000E4E3378	terminase small subunit	NA
UHGV-0180634_34	eggNOG-mapper	608534.GCWU000341_02298	Terminase small subunit	NA
UHGV-0180634_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180634_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0180634_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0180634_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180634_35	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0180634_35	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0180634_35	Structural annotation	PF04545	NA	NA
UHGV-0180634_36	PHROG	phrog_3777	NA	unknown function
UHGV-0180634_36	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-0180634_36	eggNOG-mapper	469596.HMPREF9488_02298	NA	NA
UHGV-0180634_36	Pfam	PF12957	NA	DUF3846
UHGV-0180634_36	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0180634_37	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0180634_37	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0180634_37	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0180634_37	eggNOG-mapper	1120971.AUCA01000043_gene1170	SNF2 family N-terminal domain	NA
UHGV-0180634_37	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0180634_37	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0180634_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0180634_37	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0180634_38	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180634_38	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0180634_38	eggNOG-mapper	445335.CBN_2999	VRR-NUC domain-containing protein	NA
UHGV-0180634_38	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0180634_38	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA