UHGV-0180669

Genome information

Genome length 34,088 bps

CDS count 50

Completeness 97.03% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180669
vOTU ID	vOTU-075287
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583736
BioSample	SAMN09781759
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.06
Jumbo phage	No

Genome content
Genome length	34,088 bps
GC content	57.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.97%
Average CDS length	643.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180669_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0180669_1	PHROG	phrog_21498	NA	unknown function
UHGV-0180669_1	UniRef90	UniRef90_A0A7X2P836	ParB domain-containing protein	NA
UHGV-0180669_1	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0180669_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0180669_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180669_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180669_1	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0180669_2	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0180669_2	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0180669_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0180669_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180669_3	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0180669_3	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0180669_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0180669_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180669_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180669_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180669_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180669_4	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0180669_4	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0180669_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180669_4	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0180669_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180669_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180669_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0180669_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0180669_5	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0180669_5	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0180669_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0180669_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0180669_5	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0180669_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180669_6	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0180669_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0180669_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180669_6	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0180669_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180669_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180669_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180669_7	PHROG	phrog_749	NA	unknown function
UHGV-0180669_7	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0180669_8	PHROG	phrog_19734	NA	unknown function
UHGV-0180669_8	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0180669_8	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0180669_9	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0180669_9	Structural annotation	PF05657	NA	NA
UHGV-0180669_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180669_10	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0180669_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0180669_10	Structural annotation	TIGR01725	NA	NA
UHGV-0180669_11	PHROG	phrog_88	major tail protein	tail
UHGV-0180669_11	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0180669_11	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0180669_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180669_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0180669_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0180669_14	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0180669_14	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0180669_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0180669_14	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0180669_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180669_15	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0180669_15	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0180669_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180669_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180669_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180669_16	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0180669_16	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0180669_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180669_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180669_16	COG	COG4926	Phage-related protein	NA
UHGV-0180669_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180669_17	UniRef90	UniRef90_A0A3A6E2U3	NA	NA
UHGV-0180669_21	PHROG	phrog_240	head protein	head and packaging
UHGV-0180669_21	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0180669_22	Structural annotation	NF033746, COG3764	NA	NA
UHGV-0180669_23	PHROG	phrog_1863	NA	unknown function
UHGV-0180669_23	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0180669_24	PHROG	phrog_1129	holin	lysis
UHGV-0180669_24	UniRef90	UniRef90_A0A810PUU2	Holin	NA
UHGV-0180669_24	eggNOG-mapper	1410668.JNKC01000001_gene1676	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180669_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180669_24	Structural annotation	PF06946	NA	NA
UHGV-0180669_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180669_25	PHROG	phrog_435	endolysin	lysis
UHGV-0180669_25	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180669_25	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0180669_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0180669_25	Pfam	PF05036	SPOR domain	SPOR
UHGV-0180669_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180669_25	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0180669_26	KOfam	K14059	int; integrase	NA
UHGV-0180669_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0180669_26	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0180669_26	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0180669_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180669_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180669_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180669_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180669_27	PHROG	phrog_22683	NA	unknown function
UHGV-0180669_27	UniRef90	UniRef90_UPI00189C5C1D	NA	NA
UHGV-0180669_27	eggNOG-mapper	999425.HMPREF9186_01864	NA	NA
UHGV-0180669_27	AcrCatalog	cluster_3962	NA	NA
UHGV-0180669_27	Pfam	PF13783	NA	DUF4177
UHGV-0180669_27	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0180669_28	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0180669_28	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0180669_29	UniRef90	UniRef90_A0A7X3ASF1	XRE family transcriptional regulator	NA
UHGV-0180669_29	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0180669_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180669_29	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0180669_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180669_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180669_30	UniRef90	UniRef90_UPI001D013835	helix-turn-helix domain-containing protein	NA
UHGV-0180669_30	eggNOG-mapper	1280680.AUJU01000017_gene3835	Helix-turn-helix domain	NA
UHGV-0180669_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180669_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180669_30	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180669_32	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0180669_33	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0180669_33	UniRef90	UniRef90_UPI001BB4836B	helix-turn-helix domain-containing protein	NA
UHGV-0180669_33	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180669_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0180669_33	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0180669_33	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0180669_34	Structural annotation	PF21327	NA	NA
UHGV-0180669_36	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180669_36	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0180669_36	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0180669_36	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180669_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180669_36	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0180669_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180669_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180669_37	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0180669_37	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0180669_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0180669_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180669_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180669_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0180669_38	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0180669_38	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0180669_38	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0180669_38	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0180669_38	Pfam	PF13614	AAA domain	AAA_31
UHGV-0180669_38	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0180669_38	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0180669_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0180669_39	PHROG	phrog_27290	NA	unknown function
UHGV-0180669_39	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0180669_39	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0180669_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180669_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180669_39	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0180669_41	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0180669_43	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0180669_43	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0180669_44	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180669_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0180669_44	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0180669_44	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0180669_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180669_48	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0180669_48	Structural annotation	PF11726	NA	NA
UHGV-0180669_49	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0180669_49	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0180669_49	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0180669_49	Structural annotation	PF14205	NA	NA
UHGV-0180669_50	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180669_50	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0180669_50	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0180669_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180669_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA