UHGV-0180700

Genome information

Genome length 30,972 bps

CDS count 55

Completeness 74.51% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180700
vOTU ID	vOTU-029180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_587924
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.87
Jumbo phage	No

Genome content
Genome length	30,972 bps
GC content	57.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.60%
Average CDS length	509.02 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180700_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180700_1	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0180700_1	eggNOG-mapper	689781.AUJX01000031_gene120	NA	NA
UHGV-0180700_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0180700_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0180700_2	PHROG	phrog_2412	NA	unknown function
UHGV-0180700_2	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0180700_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180700_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180700_3	UniRef90	UniRef90_UPI00164D9352	PBSX family phage terminase large subunit	NA
UHGV-0180700_3	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0180700_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180700_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180700_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180700_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180700_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180700_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180700_5	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0180700_5	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0180700_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180700_7	PHROG	phrog_8680	NA	unknown function
UHGV-0180700_7	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0180700_7	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0180700_7	Pfam	PF14386	NA	DUF4417
UHGV-0180700_7	Structural annotation	PF14386	NA	NA
UHGV-0180700_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180700_8	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0180700_8	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0180700_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180700_8	COG	COG2369	NA	NA
UHGV-0180700_8	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0180700_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0180700_10	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0180700_10	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0180700_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0180700_10	Structural annotation	PF06810	NA	NA
UHGV-0180700_11	PHROG	phrog_212	major head protein	head and packaging
UHGV-0180700_11	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0180700_11	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0180700_11	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0180700_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180700_12	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0180700_13	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0180700_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180700_14	UniRef90	UniRef90_UPI000B35398A	minor capsid protein	NA
UHGV-0180700_14	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0180700_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180700_14	Structural annotation	PF11114	NA	NA
UHGV-0180700_15	PHROG	phrog_3266	tail completion	connector
UHGV-0180700_15	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0180700_15	Structural annotation	PF20765	NA	NA
UHGV-0180700_16	PHROG	phrog_3099	NA	unknown function
UHGV-0180700_16	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0180700_16	Structural annotation	TIGR02126	NA	NA
UHGV-0180700_17	PHROG	phrog_11299	NA	unknown function
UHGV-0180700_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0180700_17	Structural annotation	PF20378	NA	NA
UHGV-0180700_18	PHROG	phrog_706	NA	unknown function
UHGV-0180700_18	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0180700_18	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0180700_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180700_18	Structural annotation	PF06854	NA	NA
UHGV-0180700_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180700_20	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0180700_20	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0180700_20	COG	COG1511	NA	NA
UHGV-0180700_20	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0180700_21	PHROG	phrog_1194	NA	unknown function
UHGV-0180700_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0180700_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0180700_22	PHROG	phrog_13879	NA	unknown function
UHGV-0180700_22	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0180700_22	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0180700_23	PHROG	phrog_18725	NA	unknown function
UHGV-0180700_23	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0180700_26	PHROG	phrog_23092	NA	unknown function
UHGV-0180700_26	eggNOG-mapper	1226322.HMPREF1545_02839	NA	NA
UHGV-0180700_27	PHROG	phrog_937	hemolysin	other
UHGV-0180700_27	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0180700_28	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0180700_31	PHROG	phrog_1129	holin	lysis
UHGV-0180700_31	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0180700_31	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0180700_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180700_31	Structural annotation	PF06946	NA	NA
UHGV-0180700_32	PHROG	phrog_21357	endolysin	lysis
UHGV-0180700_32	UniRef90	UniRef90_UPI001C00DA69	CHAP domain-containing protein	NA
UHGV-0180700_32	eggNOG-mapper	1378168.N510_02471	NLP P60 protein	NA
UHGV-0180700_32	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180700_32	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180700_32	Structural annotation	PF06672, TIGR02594, COG4322	NA	NA
UHGV-0180700_33	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0180700_33	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0180700_35	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0180700_35	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180700_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180700_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180700_35	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180700_39	PHROG	phrog_22984	NA	unknown function
UHGV-0180700_40	PHROG	phrog_16490	NA	unknown function
UHGV-0180700_40	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0180700_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180700_42	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0180700_42	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0180700_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180700_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0180700_43	UniRef90	UniRef90_UPI0003130B23	recombinase family protein	NA
UHGV-0180700_43	eggNOG-mapper	927704.SELR_25460	resolvase	NA
UHGV-0180700_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180700_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180700_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180700_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180700_43	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0180700_44	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0180700_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180700_44	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0180700_48	UniRef90	UniRef90_A0A645BBY0	HTH cro/C1-type domain-containing protein	NA
UHGV-0180700_48	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0180700_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0180700_48	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180700_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0180700_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180700_49	UniRef90	UniRef90_A0A096BAN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0180700_49	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0180700_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180700_49	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0180700_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0180700_54	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0180700_54	UniRef90	UniRef90_A0A661CSC3	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0180700_54	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0180700_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180700_55	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0180700_55	UniRef90	UniRef90_UPI001CBD79D0	DNA cytosine methyltransferase	NA
UHGV-0180700_55	eggNOG-mapper	1195236.CTER_1773	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0180700_55	COG	COG0270	DNA-cytosine methylase	NA