UHGV-0180779

Genome information

Genome length 17,901 bps

CDS count 21

Completeness 78.60% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180779
vOTU ID	vOTU-028580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_580147
BioSample	SAMN09781701
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.89
Jumbo phage	No

Genome content
Genome length	17,901 bps
GC content	47.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	93.28%
Average CDS length	796.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180779_1	PHROG	phrog_4898	holin	lysis
UHGV-0180779_2	PHROG	phrog_11037	NA	unknown function
UHGV-0180779_2	UniRef90	UniRef90_A0A3R6VA19	CHAP domain-containing protein	NA
UHGV-0180779_2	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0180779_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180779_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0180779_2	COG	COG1388	LysM repeat	NA
UHGV-0180779_2	Structural annotation	PF18013	NA	NA
UHGV-0180779_4	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0180779_4	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0180779_4	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0180779_4	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0180779_5	PHROG	phrog_2248	tail protein	tail
UHGV-0180779_5	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0180779_5	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0180779_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0180779_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0180779_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0180779_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0180779_6	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0180779_6	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0180779_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0180779_6	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0180779_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0180779_9	PHROG	phrog_21357	endolysin	lysis
UHGV-0180779_9	UniRef90	UniRef90_R5LUK1	Peptidase C51 domain-containing protein	NA
UHGV-0180779_9	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0180779_9	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180779_9	COG	COG1388	LysM repeat	NA
UHGV-0180779_9	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0180779_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0180779_10	UniRef90	UniRef90_A0A843HRH6	Phage DNA encapsidation protein	NA
UHGV-0180779_10	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0180779_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0180779_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180779_11	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0180779_11	UniRef90	UniRef90_A0A0D5YF64	Gp12	NA
UHGV-0180779_11	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0180779_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180779_11	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0180779_12	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0180779_12	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0180779_12	UniRef90	UniRef90_A0A843HKN8	DNA-directed DNA polymerase	NA
UHGV-0180779_12	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0180779_12	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0180779_12	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0180779_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180779_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180779_18	UniRef90	UniRef90_UPI000C768D7D	single-stranded DNA-binding protein	NA
UHGV-0180779_18	eggNOG-mapper	1507.HMPREF0262_03706	Single-stranded DNA-binding protein	NA
UHGV-0180779_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180779_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180779_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180779_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180779_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180779_19	Structural annotation	MF_00273	NA	NA
UHGV-0180779_21	PHROG	phrog_4264	NA	unknown function
UHGV-0180779_21	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA