UHGV-0180793

Genome information

Genome length 35,590 bps

CDS count 48

Completeness 92.05% (high-quality)

geNomad score 0.9741

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180793
vOTU ID	vOTU-067316
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_563089
BioSample	SAMN06233224
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9741
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.83
Jumbo phage	No

Genome content
Genome length	35,590 bps
GC content	52.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.39%
Average CDS length	675.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180793_3	KOfam	K03749	dedD; DedD protein	NA
UHGV-0180793_3	PHROG	phrog_20388	endolysin	lysis
UHGV-0180793_3	UniRef90	UniRef90_A0A3D0M2V0	MurNAc-LAA domain-containing protein	NA
UHGV-0180793_3	eggNOG-mapper	1128398.Curi_c05110	Sporulation related domain	NA
UHGV-0180793_3	Pfam	PF05036	SPOR domain	SPOR
UHGV-0180793_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180793_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0180793_4	PHROG	phrog_4105	NA	unknown function
UHGV-0180793_4	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0180793_5	PHROG	phrog_20258	NA	unknown function
UHGV-0180793_5	eggNOG-mapper	665956.HMPREF1032_02710	NA	NA
UHGV-0180793_8	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0180793_8	PHROG	phrog_923	NA	unknown function
UHGV-0180793_8	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0180793_8	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0180793_8	COG	COG1357	NA	NA
UHGV-0180793_8	Structural annotation	PF13599, NF011744, COG1357	NA	NA
UHGV-0180793_10	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0180793_10	UniRef90	UniRef90_A0A8J6MB86	Lar family restriction alleviation protein	NA
UHGV-0180793_10	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0180793_10	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0180793_10	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0180793_10	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0180793_10	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0180793_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180793_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180793_13	UniRef90	UniRef90_A0A3D5P905	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0180793_13	eggNOG-mapper	742765.HMPREF9457_02108	Endodeoxyribonuclease RusA	NA
UHGV-0180793_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0180793_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0180793_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0180793_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180793_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180793_14	UniRef90	UniRef90_A0A357WVP9	Single-stranded DNA-binding protein	NA
UHGV-0180793_14	eggNOG-mapper	1121334.KB911069_gene1617	Single-stranded DNA-binding protein	NA
UHGV-0180793_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180793_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180793_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180793_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180793_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180793_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180793_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180793_16	UniRef90	UniRef90_A0A6L5QUF6	Replicative DNA helicase	NA
UHGV-0180793_16	eggNOG-mapper	395494.Galf_2031	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0180793_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0180793_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180793_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180793_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0180793_17	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0180793_17	UniRef90	UniRef90_UPI000F632BBD	helix-turn-helix domain-containing protein	NA
UHGV-0180793_17	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0180793_17	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180793_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180793_17	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-0180793_18	PHROG	phrog_14970	NA	unknown function
UHGV-0180793_18	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0180793_18	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0180793_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0180793_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0180793_21	PHROG	phrog_4433	NA	unknown function
UHGV-0180793_21	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0180793_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0180793_22	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0180793_24	UniRef90	UniRef90_UPI001C63F640	helix-turn-helix domain-containing protein	NA
UHGV-0180793_24	eggNOG-mapper	285514.JNWO01000006_gene1459	recombinase activity	NA
UHGV-0180793_24	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0180793_24	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0180793_24	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0180793_24	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0180793_25	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0180793_25	UniRef90	UniRef90_A0A6N7WNE9	Helix-turn-helix domain-containing protein	NA
UHGV-0180793_25	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0180793_25	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0180793_25	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0180793_25	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0180793_28	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0180793_28	UniRef90	UniRef90_A0A2V2C7B1	Mrr_cat domain-containing protein	NA
UHGV-0180793_28	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0180793_28	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0180793_28	Structural annotation	PF04471, MF_00722, NF003270, COG1787	NA	NA
UHGV-0180793_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180793_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180793_29	UniRef90	UniRef90_A0A2Z4L710	XRE family transcriptional regulator	NA
UHGV-0180793_29	eggNOG-mapper	931276.Cspa_c07460	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180793_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180793_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180793_29	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0180793_31	KOfam	K02855	rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS	NA
UHGV-0180793_31	PHROG	phrog_7620	transcriptional regulator	transcription regulation
UHGV-0180793_31	UniRef90	UniRef90_A0A1I0P8A1	AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS	NA
UHGV-0180793_31	eggNOG-mapper	985665.HPL003_20640	helix_turn_helix, arabinose operon control protein	NA
UHGV-0180793_31	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-0180793_31	COG	COG4977	Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain	NA
UHGV-0180793_32	KOfam	K14059	int; integrase	NA
UHGV-0180793_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0180793_32	UniRef90	UniRef90_A0A3D0M0M9	Site-specific integrase	NA
UHGV-0180793_32	eggNOG-mapper	428125.CLOLEP_01837	Belongs to the 'phage' integrase family	NA
UHGV-0180793_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180793_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180793_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180793_36	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0180793_37	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0180793_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180793_38	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180793_38	UniRef90	UniRef90_A0A357WXI7	PBSX family phage terminase large subunit	NA
UHGV-0180793_38	eggNOG-mapper	526218.Sterm_1259	Phage terminase, large subunit, PBSX family	NA
UHGV-0180793_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180793_38	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180793_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180793_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180793_38	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180793_40	PHROG	phrog_156	portal protein	head and packaging
UHGV-0180793_40	UniRef90	UniRef90_UPI00193A28EA	portal protein	NA
UHGV-0180793_40	eggNOG-mapper	268407.PWYN_12425	NA	NA
UHGV-0180793_40	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180793_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0180793_42	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0180793_42	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-0180793_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0180793_44	Structural annotation	PF11650	NA	NA
UHGV-0180793_45	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0180793_45	eggNOG-mapper	1408437.JNJN01000001_gene1713	NA	NA
UHGV-0180793_45	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0180793_47	PHROG	phrog_9854	NA	unknown function
UHGV-0180793_47	UniRef90	UniRef90_A0A4R2L561	SNF2 domain-containing protein	NA
UHGV-0180793_47	eggNOG-mapper	268407.PWYN_12490	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0180793_47	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0180793_47	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA