UHGV-0180796

Genome information

Genome length 45,631 bps

CDS count 89

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180796
vOTU ID	vOTU-067315
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590680
BioSample	SAMN09781782
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.09
Jumbo phage	No

Genome content
Genome length	45,631 bps
GC content	51.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	89
CDS density	95.56%
Average CDS length	495.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180796_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0180796_2	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180796_2	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0180796_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180796_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180796_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180796_4	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0180796_4	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0180796_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180796_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180796_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180796_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180796_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0180796_5	PHROG	phrog_15768	NA	unknown function
UHGV-0180796_5	UniRef90	UniRef90_A0A7C1PUJ6	NA	NA
UHGV-0180796_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180796_5	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0180796_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180796_10	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0180796_10	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0180796_10	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0180796_10	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0180796_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180796_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180796_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180796_10	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0180796_11	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0180796_11	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180796_11	UniRef90	UniRef90_A0A098AU96	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	NA
UHGV-0180796_11	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0180796_11	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0180796_11	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180796_11	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0180796_14	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180796_14	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0180796_14	eggNOG-mapper	1511.CLOST_1546	HNH endonuclease	NA
UHGV-0180796_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180796_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0180796_14	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0180796_19	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0180796_19	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0180796_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0180796_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180796_20	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0180796_20	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0180796_21	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0180796_22	PHROG	phrog_24386	NA	unknown function
UHGV-0180796_22	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0180796_22	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0180796_23	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0180796_23	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-0180796_23	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0180796_23	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0180796_23	Structural annotation	PF18909	NA	NA
UHGV-0180796_24	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0180796_24	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0180796_25	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0180796_25	UniRef90	UniRef90_A5MYL4	Phage-related protein	NA
UHGV-0180796_25	eggNOG-mapper	431943.CKL_1850	phage regulatory protein, rha family	NA
UHGV-0180796_25	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0180796_25	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0180796_25	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0180796_25	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0180796_26	UniRef90	UniRef90_UPI00164C5C54	helix-turn-helix domain containing protein	NA
UHGV-0180796_26	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0180796_26	Structural annotation	PF13542	NA	NA
UHGV-0180796_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180796_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180796_27	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0180796_27	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0180796_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180796_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180796_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180796_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180796_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180796_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180796_28	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0180796_28	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0180796_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180796_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180796_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180796_29	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0180796_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0180796_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180796_29	COG	COG2369	NA	NA
UHGV-0180796_29	Structural annotation	PF06152	NA	NA
UHGV-0180796_30	Structural annotation	PF18152	NA	NA
UHGV-0180796_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0180796_31	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0180796_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180796_32	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0180796_32	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0180796_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180796_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180796_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180796_32	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180796_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180796_33	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0180796_34	PHROG	phrog_3366	NA	unknown function
UHGV-0180796_34	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0180796_34	Pfam	PF20536	NA	DUF6751
UHGV-0180796_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0180796_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180796_35	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0180796_35	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0180796_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180796_35	Structural annotation	PF11114	NA	NA
UHGV-0180796_36	PHROG	phrog_3266	tail completion	connector
UHGV-0180796_36	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0180796_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0180796_36	Structural annotation	PF12691	NA	NA
UHGV-0180796_37	PHROG	phrog_3099	NA	unknown function
UHGV-0180796_37	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0180796_37	Structural annotation	TIGR02126	NA	NA
UHGV-0180796_38	PHROG	phrog_11299	NA	unknown function
UHGV-0180796_38	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0180796_38	Structural annotation	PF10666	NA	NA
UHGV-0180796_39	PHROG	phrog_706	NA	unknown function
UHGV-0180796_39	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0180796_39	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0180796_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180796_39	Structural annotation	PF06854	NA	NA
UHGV-0180796_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180796_40	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0180796_40	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0180796_40	COG	COG1511	NA	NA
UHGV-0180796_40	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0180796_41	PHROG	phrog_1194	NA	unknown function
UHGV-0180796_41	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0180796_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0180796_42	PHROG	phrog_13879	NA	unknown function
UHGV-0180796_42	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0180796_42	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0180796_43	PHROG	phrog_18725	NA	unknown function
UHGV-0180796_43	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0180796_44	Structural annotation	PF19789	NA	NA
UHGV-0180796_45	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0180796_48	PHROG	phrog_10898	NA	unknown function
UHGV-0180796_48	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0180796_48	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-0180796_48	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0180796_49	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0180796_51	PHROG	phrog_37900	NA	unknown function
UHGV-0180796_51	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0180796_51	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0180796_51	Pfam	PF19789	NA	DUF6273
UHGV-0180796_51	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0180796_51	Structural annotation	PF19789	NA	NA
UHGV-0180796_53	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0180796_54	PHROG	phrog_937	hemolysin	other
UHGV-0180796_54	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0180796_56	PHROG	phrog_13256	NA	unknown function
UHGV-0180796_56	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0180796_57	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0180796_57	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0180796_57	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180796_57	Structural annotation	NF033743	NA	NA
UHGV-0180796_58	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0180796_59	PHROG	phrog_3754	NA	unknown function
UHGV-0180796_59	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0180796_60	PHROG	phrog_21718	NA	unknown function
UHGV-0180796_60	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180796_61	PHROG	phrog_22984	NA	unknown function
UHGV-0180796_62	PHROG	phrog_16490	NA	unknown function
UHGV-0180796_62	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180796_64	PHROG	phrog_20016	NA	unknown function
UHGV-0180796_64	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0180796_64	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0180796_64	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180796_65	Structural annotation	PF12510	NA	NA
UHGV-0180796_66	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0180796_67	KOfam	K14059	int; integrase	NA
UHGV-0180796_67	PHROG	phrog_1	integrase	integration and excision
UHGV-0180796_67	UniRef90	UniRef90_A0A3D3Y5E0	Integrase	NA
UHGV-0180796_67	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0180796_67	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180796_67	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0180796_67	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0180796_68	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180796_68	Structural annotation	PF12844	NA	NA
UHGV-0180796_70	PHROG	phrog_26308	NA	unknown function
UHGV-0180796_70	UniRef90	UniRef90_A0A3S1E765	Zinc ribbon domain-containing protein	NA
UHGV-0180796_70	eggNOG-mapper	1345695.CLSA_c29670	NA	NA
UHGV-0180796_70	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0180796_70	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0180796_70	Structural annotation	PF03843, MF_01959, TIGR00752, NF041910, COG3390	NA	NA
UHGV-0180796_74	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0180796_74	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180796_74	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0180796_74	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0180796_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180796_74	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180796_76	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0180796_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180796_76	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0180796_80	PHROG	phrog_4973	NA	unknown function
UHGV-0180796_80	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0180796_80	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0180796_80	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0180796_80	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0180796_82	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180796_82	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-0180796_82	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0180796_82	Pfam	PF06378	NA	DUF1071
UHGV-0180796_82	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0180796_83	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0180796_83	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0180796_84	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180796_84	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0180796_84	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0180796_84	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0180796_85	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180796_85	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0180796_85	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0180796_85	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180796_86	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0180796_86	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0180796_86	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0180796_87	PHROG	phrog_1029	NA	unknown function
UHGV-0180796_87	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0180796_87	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0180796_89	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180796_89	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180796_89	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0180796_89	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0180796_89	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180796_89	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180796_89	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180796_89	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180796_89	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA