UHGV-0180879

Genome information

Genome length 23,572 bps

CDS count 45

Completeness 59.58% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180879
vOTU ID	vOTU-029188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586222
BioSample	SAMN09781741
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.86
Jumbo phage	No

Genome content
Genome length	23,572 bps
GC content	52.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.87%
Average CDS length	489.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180879_3	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0180879_3	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0180879_3	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0180879_4	PHROG	phrog_38832	NA	unknown function
UHGV-0180879_4	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0180879_7	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0180879_7	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0180879_10	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0180879_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180879_12	UniRef90	UniRef90_F3AXV7	HTH cro/C1-type domain-containing protein	NA
UHGV-0180879_12	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0180879_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180879_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180879_12	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0180879_13	Structural annotation	PF03885	NA	NA
UHGV-0180879_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180879_14	UniRef90	UniRef90_A0A1C2Y3K2	HTH cro/C1-type domain-containing protein	NA
UHGV-0180879_14	eggNOG-mapper	349123.Lreu23DRAFT_4238	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180879_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180879_14	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0180879_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180879_17	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0180879_18	KOfam	K14059	int; integrase	NA
UHGV-0180879_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0180879_18	UniRef90	UniRef90_UPI0013F5BA77	tyrosine-type recombinase/integrase	NA
UHGV-0180879_18	eggNOG-mapper	478749.BRYFOR_05407	Belongs to the 'phage' integrase family	NA
UHGV-0180879_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180879_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180879_18	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0180879_19	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0180879_19	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0180879_22	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0180879_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0180879_23	PHROG	phrog_670	endolysin	lysis
UHGV-0180879_23	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180879_23	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0180879_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0180879_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0180879_23	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0180879_24	PHROG	phrog_13256	NA	unknown function
UHGV-0180879_24	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0180879_25	PHROG	phrog_918	NA	unknown function
UHGV-0180879_25	UniRef90	UniRef90_UPI000F794B8B	NA	NA
UHGV-0180879_25	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0180879_25	Pfam	PF19791	NA	DUF6275
UHGV-0180879_25	Structural annotation	PF19791	NA	NA
UHGV-0180879_29	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0180879_30	PHROG	phrog_13589	NA	unknown function
UHGV-0180879_30	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0180879_31	PHROG	phrog_31538	NA	unknown function
UHGV-0180879_31	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0180879_32	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0180879_35	PHROG	phrog_32308	NA	unknown function
UHGV-0180879_35	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-0180879_35	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0180879_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180879_36	PHROG	phrog_1194	NA	unknown function
UHGV-0180879_36	eggNOG-mapper	1305708.M9Q2F8_9CAUD	NA	NA
UHGV-0180879_36	Pfam	PF20458	NA	DUF6711
UHGV-0180879_36	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0180879_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180879_37	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0180879_37	COG	COG1511	NA	NA
UHGV-0180879_37	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0180879_38	PHROG	phrog_706	NA	unknown function
UHGV-0180879_38	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0180879_38	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0180879_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180879_38	Structural annotation	PF06854	NA	NA
UHGV-0180879_39	eggNOG-mapper	1408437.JNJN01000010_gene1237	NA	NA
UHGV-0180879_39	Structural annotation	PF10666	NA	NA
UHGV-0180879_40	PHROG	phrog_3099	NA	unknown function
UHGV-0180879_40	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0180879_40	Structural annotation	TIGR02126	NA	NA
UHGV-0180879_41	PHROG	phrog_3266	tail completion	connector
UHGV-0180879_41	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0180879_41	Structural annotation	PF20765	NA	NA
UHGV-0180879_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180879_42	UniRef90	UniRef90_A0A4R1QRE8	Minor capsid protein	NA
UHGV-0180879_42	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0180879_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180879_42	Structural annotation	PF11114	NA	NA
UHGV-0180879_43	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0180879_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180879_44	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0180879_45	PHROG	phrog_212	major head protein	head and packaging
UHGV-0180879_45	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0180879_45	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0180879_45	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA