UHGV-0180896

Genome information

Genome length 40,639 bps

CDS count 66

Completeness 99.63% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180896
vOTU ID	vOTU-072589
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_586183
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.97
Jumbo phage	No

Genome content
Genome length	40,639 bps
GC content	52.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.34%
Average CDS length	568.14 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180896_1	PHROG	phrog_8680	NA	unknown function
UHGV-0180896_1	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0180896_1	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0180896_1	Pfam	PF14386	NA	DUF4417
UHGV-0180896_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180896_7	Structural annotation	PF04545	NA	NA
UHGV-0180896_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0180896_8	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0180896_8	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0180896_8	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0180896_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0180896_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0180896_8	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0180896_9	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0180896_9	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0180896_9	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0180896_9	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0180896_9	Pfam	PF13614	AAA domain	AAA_31
UHGV-0180896_9	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0180896_9	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0180896_11	PHROG	phrog_6969	NA	unknown function
UHGV-0180896_11	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0180896_11	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0180896_11	Pfam	PF19481	NA	DUF6017
UHGV-0180896_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0180896_11	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0180896_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180896_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180896_12	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0180896_12	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0180896_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180896_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180896_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180896_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0180896_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0180896_13	PHROG	phrog_7566	NA	unknown function
UHGV-0180896_13	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0180896_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0180896_15	eggNOG-mapper	1118057.CAGX01000020_gene1649	NA	NA
UHGV-0180896_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0180896_16	PHROG	phrog_14970	NA	unknown function
UHGV-0180896_16	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0180896_16	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0180896_19	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-0180896_26	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0180896_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180896_27	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0180896_27	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0180896_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0180896_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180896_28	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0180896_31	eggNOG-mapper	394503.Ccel_2974	NA	NA
UHGV-0180896_31	Structural annotation	COG5342	NA	NA
UHGV-0180896_34	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0180896_34	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0180896_34	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0180896_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180896_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180896_34	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0180896_35	KOfam	K14059	int; integrase	NA
UHGV-0180896_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0180896_35	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0180896_35	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0180896_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180896_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180896_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180896_36	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0180896_37	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0180896_38	PHROG	phrog_16490	NA	unknown function
UHGV-0180896_38	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180896_43	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0180896_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180896_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0180896_43	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0180896_45	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0180896_47	PHROG	phrog_15303	NA	unknown function
UHGV-0180896_48	PHROG	phrog_1863	NA	unknown function
UHGV-0180896_48	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0180896_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0180896_49	PHROG	phrog_291	endolysin	lysis
UHGV-0180896_49	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0180896_49	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0180896_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0180896_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0180896_49	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0180896_50	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0180896_50	UniRef90	UniRef90_UPI001C232BF4	SGNH/GDSL hydrolase family protein	NA
UHGV-0180896_50	eggNOG-mapper	880070.Cycma_1221	lipolytic protein G-D-S-L family	NA
UHGV-0180896_50	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0180896_50	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0180896_52	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0180896_52	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0180896_52	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0180896_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180896_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0180896_52	COG	COG4926	Phage-related protein	NA
UHGV-0180896_52	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0180896_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180896_53	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0180896_53	eggNOG-mapper	1487921.DP68_11370	tail component	NA
UHGV-0180896_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180896_53	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0180896_54	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0180896_54	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0180896_54	eggNOG-mapper	596328.HMPREF0578_1241	phage tail tape measure protein	NA
UHGV-0180896_54	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180896_54	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180896_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180896_54	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0180896_57	PHROG	phrog_88	major tail protein	tail
UHGV-0180896_57	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0180896_57	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0180896_57	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0180896_57	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0180896_58	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0180896_58	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0180896_58	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0180896_58	Structural annotation	TIGR01725	NA	NA
UHGV-0180896_59	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0180896_59	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0180896_60	PHROG	phrog_19734	NA	unknown function
UHGV-0180896_60	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0180896_60	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0180896_60	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0180896_61	PHROG	phrog_749	NA	unknown function
UHGV-0180896_61	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0180896_62	PHROG	phrog_10	major head protein	head and packaging
UHGV-0180896_62	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0180896_62	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0180896_62	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180896_62	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0180896_62	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180896_62	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0180896_62	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180896_63	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0180896_63	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0180896_63	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-0180896_63	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0180896_63	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0180896_63	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0180896_63	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0180896_64	PHROG	phrog_12	portal protein	head and packaging
UHGV-0180896_64	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0180896_64	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0180896_64	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0180896_64	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0180896_64	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0180896_64	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0180896_65	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0180896_65	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0180896_65	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0180896_65	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0180896_65	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180896_65	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0180896_66	PHROG	phrog_13845	NA	unknown function
UHGV-0180896_66	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0180896_66	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA